HHSEARCH alignment of GI: 254780608 and SCOP domain: d1vioa2

Alignment

Probab=98.52  E-value=6.1e-08  Score=67.27  Aligned_cols=50  Identities=18%  Similarity=0.319  Sum_probs=45.7

Q ss_pred             CCCHHHHHHHHCCCCCHHHHHHHHHCCCCEECCEEEC-CCCCCCCCCEEEEE
Q ss_conf             8668999998767889899999998499038878845-11211799889993
Q gi|254780608|r   18 NMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRVK-FNNRIQSGQVVRIP   68 (346)
Q Consensus        18 g~RLd~~L~~~~~~~sr~~~~~lir~G~V~VNG~~vk-~~~~v~~GD~I~i~   68 (346)
                      .||||+||++.. ..||++++++|++|+|+|||+.++ +++.|..||.|.+.
T Consensus         1 smRLD~~Ls~~~-~~SR~~a~~lI~~g~V~Vng~~v~~~~~~v~~~d~I~~~   51 (58)
T d1vioa2           1 SLRLDKFIAENV-GLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFE   51 (58)
T ss_dssp             CEEHHHHHHHHH-TCCHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEET
T ss_pred             CCHHHHHHHHCC-CCCHHHHHHHHHCCEEEECCEEECCCCCCCCCCCEEEEC
T ss_conf             927999999858-978999999998592899999947788798999999999

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Alpha-L RNA-binding motif
superfamily: Alpha-L RNA-binding motif
family: Pseudouridine synthase RsuA N-terminal domain
domain: Pseudouridine synthase RsuA N-terminal domain
species: Haemophilus influenzae [TaxId: 727]