HHSEARCH alignment of GI: 254780608 and SCOP domain: d2apoa2

Alignment

Probab=96.26  E-value=0.0011  Score=40.54  Aligned_cols=70  Identities=24%  Similarity=0.350  Sum_probs=47.6

Q ss_pred             CCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf             85688417653112235785332332011011111001333544534222404621231012221023333221112000
Q gi|254780608|r  106 SKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWS  185 (346)
Q Consensus       106 ~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~A  185 (346)
                      ..+++||||.|+.+|.       +...+....+  ..+.+-..-||--.||||++|-++.+  .+...|..  -.|+|.|
T Consensus        29 ~G~l~idKP~G~TS~~-------vv~~ikk~l~--~kKvGH~GTLDP~AtGvL~v~iG~aT--Kl~~~~~~--~~K~Y~~   95 (230)
T d2apoa2          29 YGVVVVDKPRGPTSHE-------VSTWVKKILN--LDKAGHGGTLDPKVTGVLPVALERAT--KTIPMWHI--PPKEYVC   95 (230)
T ss_dssp             TEEEEEEECSSSCHHH-------HHHHHHHHTT--CSCEEESSCCCTTCEEEEEEEEGGGG--GGGGGTTS--SCEEEEE
T ss_pred             CCEEEEECCCCCCHHH-------HHHHHHHHCC--CCCCCCCCCCCCCCEEEEEEEECHHH--HHHHHHHC--CCCEEEE
T ss_conf             8289997899898899-------9999999718--78877665467201246666533888--99999841--6845999


Q ss_pred             CCC
Q ss_conf             134
Q gi|254780608|r  186 LVW  188 (346)
Q Consensus       186 iv~  188 (346)
                      .+.
T Consensus        96 ~~~   98 (230)
T d2apoa2          96 LMH   98 (230)
T ss_dssp             EEE
T ss_pred             EEE
T ss_conf             999

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Pseudouridine synthase
superfamily: Pseudouridine synthase
family: Pseudouridine synthase II TruB
domain: Pseudouridine synthase II TruB
species: Archaeon Methanococcus jannaschii [TaxId: 2190]