HHSEARCH alignment of GI: 254780608 and SCOP domain: d2ey4a2

Alignment
>d2ey4a2 d.265.1.2 (A:8-252) Pseudouridine synthase II TruB {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=96.23  E-value=0.00072  Score=41.60  Aligned_cols=70  Identities=23%  Similarity=0.340  Sum_probs=47.4

Q ss_pred             CCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf             85688417653112235785332332011011111001333544534222404621231012221023333221112000
Q gi|254780608|r  106 SKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWS  185 (346)
Q Consensus       106 ~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~A  185 (346)
                      ..+++||||.|+.+|-       +...+.....  ..+.+-...||-..||||+++-++.+  .+...|.  ...|+|.|
T Consensus        42 ~G~l~idKP~G~TS~~-------vv~~vkk~l~--~kKvGH~GTLDP~AtGvL~i~iG~aT--Kl~~~~~--~~~K~Y~~  108 (245)
T d2ey4a2          42 FGVINLDKPPGPTSHE-------VVAWIKKILN--LEKAGHGGTLDPKVSGVLPVALEKAT--RVVQALL--PAGKEYVA  108 (245)
T ss_dssp             TEEEEEEECSSSCHHH-------HHHHHHHHTT--CSCEEESSCCCTTCEEEEEEEEGGGG--GGHHHHT--TSCEEEEE
T ss_pred             CCEEEEECCCCCCHHH-------HHHHHHHHHC--CCCCCCCCCCCCCCEEEEEEEECHHH--HHHHHHC--CCCCEEEE
T ss_conf             8289996799798899-------9999998717--67777576589751556788844888--8999966--17848999


Q ss_pred             CCC
Q ss_conf             134
Q gi|254780608|r  186 LVW  188 (346)
Q Consensus       186 iv~  188 (346)
                      .+.
T Consensus       109 ~~~  111 (245)
T d2ey4a2         109 LMH  111 (245)
T ss_dssp             EEE
T ss_pred             EEE
T ss_conf             888


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Pseudouridine synthase
superfamily: Pseudouridine synthase
family: Pseudouridine synthase II TruB
domain: Pseudouridine synthase II TruB
species: Archaeon Pyrococcus furiosus [TaxId: 2261]