HHSEARCH alignment of GI: 254780608 and SCOP domain: d2gy9d1

Alignment

Probab=97.85  E-value=1.5e-05  Score=52.17  Aligned_cols=52  Identities=15%  Similarity=0.128  Sum_probs=44.4

Q ss_pred             CCHHHHHHHHCCCCCHHHHHHHHHCCCCEECCEEEC-CCCCCCCCCEEEEECC
Q ss_conf             668999998767889899999998499038878845-1121179988999356
Q gi|254780608|r   19 MRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRVK-FNNRIQSGQVVRIPPV   70 (346)
Q Consensus        19 ~RLd~~L~~~~~~~sr~~~~~lir~G~V~VNG~~vk-~~~~v~~GD~I~i~~~   70 (346)
                      +|||..+-+.==..|+.+++++|..|.|.|||+++. |++.|+.||+|.+-..
T Consensus        94 ~RLDnvv~R~gfa~t~~~ARQ~v~Hghi~VNgk~VnIPSy~vk~GDvIsvkek  146 (204)
T d2gy9d1          94 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREK  146 (204)
T ss_dssp             TBHHHHHHHHTSSSSHHHHHHHHHTTCEEESSSBCCCTTCBCCTTCBEEECTT
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHCCEECCCEEEEECCEEECCCCEEEECCC
T ss_conf             98888876056202489999999851164198899750076058977886221

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Alpha-L RNA-binding motif
superfamily: Alpha-L RNA-binding motif
family: Ribosomal protein S4
domain: Ribosomal protein S4
species: Escherichia coli [TaxId: 562]