Query gi|254780608|ref|YP_003065021.1| ribosomal large subunit pseudouridine synthase C [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 346
No_of_seqs 165 out of 5456
Neff 7.1
Searched_HMMs 13730
Date Wed Jun 1 10:22:37 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780608.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v9fa_ d.265.1.3 (A:) Ribosom 100.0 0 0 433.9 9.6 228 95-329 4-243 (250)
2 d1v9ka_ d.265.1.3 (A:) Ribosom 100.0 0 0 433.2 9.6 218 100-322 2-223 (227)
3 d1vioa1 d.265.1.3 (A:58-231) R 99.9 1.2E-27 8.7E-32 191.5 5.8 148 104-274 1-150 (174)
4 d1kska4 d.265.1.3 (A:60-231) R 99.9 3.6E-23 2.6E-27 163.3 5.8 144 108-274 3-148 (172)
5 d1dm9a_ d.66.1.3 (A:) Heat sho 98.6 3.8E-08 2.8E-12 68.5 6.8 54 17-70 3-56 (104)
6 d1kska3 d.66.1.5 (A:1-59) Pseu 98.6 4.2E-08 3.1E-12 68.3 5.3 49 19-68 1-50 (59)
7 d1vioa2 d.66.1.5 (A:0-57) Pseu 98.5 6.1E-08 4.4E-12 67.3 5.4 50 18-68 1-51 (58)
8 d1p9ka_ d.66.1.6 (A:) Hypothet 98.1 3.4E-07 2.5E-11 62.6 2.0 66 2-68 5-71 (79)
9 d2gy9d1 d.66.1.2 (D:2-205) Rib 97.8 1.5E-05 1.1E-09 52.2 6.0 52 19-70 94-146 (204)
10 d1c06a_ d.66.1.2 (A:) Ribosoma 97.8 2.3E-05 1.7E-09 51.0 6.3 51 19-69 51-102 (159)
11 d2uubd1 d.66.1.2 (D:2-209) Rib 97.7 4.1E-05 3E-09 49.5 6.6 52 19-70 98-150 (208)
12 d1k8wa5 d.265.1.2 (A:9-250) Ps 96.9 0.00016 1.2E-08 45.6 1.6 70 106-188 4-73 (242)
13 d1r3ea2 d.265.1.2 (A:10-237) P 96.7 0.00037 2.7E-08 43.4 2.6 70 106-188 3-72 (228)
14 d1sgva2 d.265.1.2 (A:3-235) Ps 96.6 0.00049 3.6E-08 42.6 2.6 70 106-188 4-73 (233)
15 d2apoa2 d.265.1.2 (A:17-246) P 96.3 0.0011 7.7E-08 40.5 2.6 70 106-188 29-98 (230)
16 d2ey4a2 d.265.1.2 (A:8-252) Ps 96.2 0.00072 5.2E-08 41.6 1.6 70 106-188 42-111 (245)
17 d1h3fa2 d.66.1.4 (A:352-432) T 95.2 0.011 8.2E-07 34.0 4.5 56 10-65 6-65 (81)
18 d1jh3a_ d.66.1.4 (A:) Tyrosyl- 92.4 0.18 1.3E-05 26.5 6.2 52 10-63 25-77 (99)
19 d1fm0d_ d.15.3.1 (D:) Molybdop 77.2 2.1 0.00015 19.8 5.8 45 22-71 32-78 (81)
20 d1vjka_ d.15.3.1 (A:) Molybdop 70.6 1.3 9.5E-05 21.1 2.6 27 45-71 61-87 (88)
21 d1xo3a_ d.15.3.3 (A:) C9orf74 54.7 1.1 8.2E-05 21.4 -0.2 63 9-71 26-98 (101)
22 d1rwsa_ d.15.3.2 (A:) Hypothet 54.4 3.1 0.00023 18.7 2.0 45 17-70 20-64 (68)
23 d1v8ca1 d.15.3.1 (A:1-87) MoaD 52.1 6.4 0.00047 16.7 4.9 47 21-71 28-84 (87)
24 d2hj1a1 d.15.3.4 (A:11-87) Hyp 42.8 4.2 0.00031 17.8 1.2 38 25-69 37-74 (77)
25 d1wxqa2 d.15.10.2 (A:320-395) 31.4 5.7 0.00041 17.0 0.4 21 47-67 53-73 (76)
26 d1kpfa_ d.13.1.1 (A:) Protein 30.0 14 0.001 14.5 2.3 14 99-112 14-27 (111)
27 d1xqua_ d.13.1.1 (A:) Putative 24.6 18 0.0013 13.9 2.3 15 99-113 16-30 (113)
28 d1quba5 g.18.1.1 (A:244-326) b 23.8 11 0.00082 15.1 0.8 29 41-69 6-38 (76)
29 d1tkea1 d.15.10.1 (A:1-62) Thr 23.5 19 0.0014 13.8 2.5 45 16-67 15-59 (62)
30 d2exda1 b.40.12.1 (A:72-143) H 21.6 20 0.0015 13.5 2.4 25 43-67 30-56 (72)
31 d1klla_ d.32.1.2 (A:) Mitomyci 21.6 20 0.0015 13.5 3.7 46 252-312 83-128 (128)
No 1
>d1v9fa_ d.265.1.3 (A:) Ribosomal large subunit pseudouridine synthase D, RluD {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=0 Score=433.87 Aligned_cols=228 Identities=27% Similarity=0.433 Sum_probs=181.7
Q ss_pred CCCCCEEEEECCCEEEECCCCCCEEECCCCCCC-CCCCCHHHCCCC--CCCCCCCCCCCCCCCCCEEEEECCCCHHHHHC
Q ss_conf 345430786178568841765311223578533-233201101111--10013335445342224046212310122210
Q gi|254780608|r 95 DFLKSILLYEDSKIYVFNKPAGISVQGGSGIAY-HIDGFLKSWVDS--KGQKPRLTHRLDQETSGILVVARTRAAAQHLT 171 (346)
Q Consensus 95 ~~~~~~IiyED~~livinKPaGl~vhp~~g~~~-~~~~~l~~~~~~--~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~ 171 (346)
+.++++|||||++|||||||+||+|||+++... ++.+.+...... ....+++|||||++||||||||||+.+++.|+
T Consensus 4 ~~~~l~IlyeD~~~ivvnKP~gl~~hp~~~~~~~t~~~~l~~~~~~~~~~~~~~~vHRLDr~TSGlll~Ak~~~a~~~l~ 83 (250)
T d1v9fa_ 4 QDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLV 83 (250)
T ss_dssp CCCCCCEEEECSSEEEEEECSSCCSSCBTTBSSSSHHHHHHHHCGGGGGSGGGGBCCCCCTTCEEEEEEESSHHHHHHHH
T ss_pred CCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEECCCHHHHHHH
T ss_conf 88997789978999999999998780799999845999999973650488742577514888765178851527888632
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEEEEECHHH
Q ss_conf 23333221112000134565410000000122346554321113355555553034301013432024420457861237
Q gi|254780608|r 172 ESFRMRRIQKIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQPHTGR 251 (346)
Q Consensus 172 ~~f~~~~v~K~Y~Aiv~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~slv~~~l~TGR 251 (346)
++|+++.|.|+|+|+|.|.+.. .+.++.++....... .. ....++||.|+|+|++++..+ .+||++|+|.|||
T Consensus 84 ~~f~~~~v~K~Y~a~~~g~~~~-~~~~~~~~~~~~~~~-~~----~~~~~~gk~a~T~~~~l~~~~-~~slv~~~~~TGR 156 (250)
T d1v9fa_ 84 ESLQRREITREYEAVAIGHMTA-GGTVDEPISRHPTKR-TH----MAVHPMGKPAVTHYRIMEHFR-VHTRLRLRLETGR 156 (250)
T ss_dssp HHHHTTCSEEEEEEEEESCCCC-CEEEECCEEECSSCT-TC----EEECTTSBCCEEEEEEEEECS-SEEEEEEEESCCC
T ss_pred HHHCCCEEEEEEEEEECCCCCC-CCCCCCCCCCCCCCC-CE----EEECCCCEECCCCCHHHHCCC-CCEEEEEEECCCC
T ss_conf 3304545767744321135464-566235533577666-30----687789834441011344056-7426887863663
Q ss_pred HHHHHHHHHHCCCCEECCCCCCCCCCCHH--------CCCCCCCHHHHHHHHEEECCCCC-EEEEECCCCHHHHHHHHHH
Q ss_conf 89999999963980004644466522100--------01344624131100043758896-4999839978999999980
Q gi|254780608|r 252 THQLRVHALHMGCPIVGDHKYCANFKGNF--------TSPIQNKLYLHARYMDLPHPEGG-RLQITAPLPAHMVKTWDSL 322 (346)
Q Consensus 252 ~HQIRvhl~~~g~PivGD~~Yg~~~~~~~--------~~~~~~r~~LHa~~l~f~hp~~~-~~~~~aplP~~f~~~l~~l 322 (346)
|||||+||+++||||+||.+||+...... ......||+|||++|+|.||.++ +++|+||+|+||.++|+.|
T Consensus 157 ~HQIRvHla~lG~PIlGD~~YG~~~~~~~~~~~~~~~~~~~~~r~~LHA~~L~f~hP~t~~~~~~~aplP~df~~~l~~L 236 (250)
T d1v9fa_ 157 THQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVM 236 (250)
T ss_dssp TTHHHHHHHHTTCCBTTCTTTTCCCCCCTTCCHHHHHHHHHCCSCSEEEEEEEEECTTTCCEEEEECCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCHHHHHHHHCCCHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHH
T ss_conf 27999999985983001115762113544455878887742526456407115326899986999807909999999997
Q ss_pred CCCCCCC
Q ss_conf 8987520
Q gi|254780608|r 323 GFKYDRN 329 (346)
Q Consensus 323 ~~~~d~~ 329 (346)
++.+++.
T Consensus 237 ~~~~~~~ 243 (250)
T d1v9fa_ 237 RADFEEH 243 (250)
T ss_dssp HHHHHHH
T ss_pred HHHHHHC
T ss_conf 5177756
No 2
>d1v9ka_ d.265.1.3 (A:) Ribosomal large subunit pseudouridine synthase C, RluC {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=0 Score=433.16 Aligned_cols=218 Identities=33% Similarity=0.522 Sum_probs=183.3
Q ss_pred EEEEECCCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCC
Q ss_conf 07861785688417653112235785332332011011111001333544534222404621231012221023333221
Q gi|254780608|r 100 ILLYEDSKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRI 179 (346)
Q Consensus 100 ~IiyED~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v 179 (346)
.||||||+|||||||+||+|||+++...++.+.+..+.. ....+++|||||++||||||||||+++++.|+++|+++.+
T Consensus 2 ~IlyeD~~ilvvnKP~gl~~h~~~~~~~~~~~~l~~~~~-~~~~~~~vHRLD~~TSGlll~Ak~~~~~~~l~~~f~~~~v 80 (227)
T d1v9ka_ 2 VIMYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRP-EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGM 80 (227)
T ss_dssp CEEEECSSEEEEEECTTSCSSCCSSSBCCHHHHHHHHST-TCSCCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHTTCS
T ss_pred EEEEECCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCC-CCCCCCEEEECCCEEEEEEEEECCHHHHHHHHHHHHCCCC
T ss_conf 799967999999999998648998995359999998677-8765315632242020046651556999999999860566
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEEEEECHHHHHHHHHHH
Q ss_conf 11200013456541000000012234655432111335555555303430101343202442045786123789999999
Q gi|254780608|r 180 QKIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQLRVHA 259 (346)
Q Consensus 180 ~K~Y~Aiv~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~slv~~~l~TGR~HQIRvhl 259 (346)
.|+|+|+|+|.+....+.++.++..........+ .....+++.|.|+|++++..+ .+|||+|+|.||||||||+||
T Consensus 81 ~K~Y~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~gk~a~t~~~~l~~~~-~~slv~~~~~TGRtHQIRvHl 156 (227)
T d1v9ka_ 81 QKDYLALVRGQWQSHVKSVQAPLLKNILQSGERI---VRVSQEGKPSETRFKVEERYA-FATLVRCSPVTGRTHQIRVHT 156 (227)
T ss_dssp EEEEEEEEESCCCTTCCEECCCEEEEECTTSCEE---EEECTTSBCCCEEEEEEEECS-SEEEEEEEESSCCTTHHHHHH
T ss_pred CCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEE---EECCCCCCCCCEEEHHHHHCC-CCEEEEEEECCCCHHHHHHHH
T ss_conf 4201112357631236752233001332110255---520789801205620455258-737999994657347887777
Q ss_pred HHCCCCEECCCCCCCCCCCH---HCCCCCCCHHHHHHHHEEECCCCCE-EEEECCCCHHHHHHHHHH
Q ss_conf 96398000464446652210---0013446241311000437588964-999839978999999980
Q gi|254780608|r 260 LHMGCPIVGDHKYCANFKGN---FTSPIQNKLYLHARYMDLPHPEGGR-LQITAPLPAHMVKTWDSL 322 (346)
Q Consensus 260 ~~~g~PivGD~~Yg~~~~~~---~~~~~~~r~~LHa~~l~f~hp~~~~-~~~~aplP~~f~~~l~~l 322 (346)
+++||||+||.+||+..... .......|++|||++|+|.||.+++ ++|+||+|++|+++|++|
T Consensus 157 a~lG~PIvGD~~Yg~~~~~~~~~~~~~~~~rl~LHa~~L~f~hP~t~~~~~~~aplP~~f~~~l~~L 223 (227)
T d1v9ka_ 157 QYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKM 223 (227)
T ss_dssp HHTTCCBTTCTTTSCHHHHHHHHHTTCCCCSCCEEEEEEEEECTTTCCEEEEECCCCHHHHHHHHHH
T ss_pred HHCCCEECCCCCCCCCCCCCCCHHCCCCCCHHHHHCCCCEEECCCCCCEEEEEECCCHHHHHHHHHH
T ss_conf 6459533467603131124300001468643788715029188999988999926919999999998
No 3
>d1vioa1 d.265.1.3 (A:58-231) Ribosomal small subunit pseudouridine 516 synthase RsuA {Haemophilus influenzae [TaxId: 727]}
Probab=99.94 E-value=1.2e-27 Score=191.52 Aligned_cols=148 Identities=18% Similarity=0.241 Sum_probs=102.5
Q ss_pred ECCCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCC
Q ss_conf 17856884176531122357853323320110111110013335445342224046212310122210233332211120
Q gi|254780608|r 104 EDSKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIY 183 (346)
Q Consensus 104 ED~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y 183 (346)
||+.++++|||+|++|+++++...++.+++.. ....+.++|||||++||||||||++...+..+... ...+.|+|
T Consensus 1 e~~~Yi~lNKP~G~~~~~~~~~~~~v~~~l~~---~~~~~l~~V~RLD~~TsGLll~t~d~~~~~~l~~~--~~~~~k~y 75 (174)
T d1vioa1 1 EEGQYFMLNKPQGCVCSNDDGDYPTIYQFFDY---PLAGKLHSAGRLDVDTTGLVLLTDDGQWSHRITSP--KHHCEKTY 75 (174)
T ss_dssp CCCCEEEEEECTTCBSSCCC--CCBGGGGSCT---TGGGGCEESSCCCTTCEEEEEEESCHHHHHHHHCT--TSCCCEEE
T ss_pred CCCEEEEEECCCCEEECCCCCCCCCHHHHCCC---CCCCCEEEEECCCHHHHCEEEEEECCCCCCCCCCC--CCCEEEEE
T ss_conf 99889999999998937789899837885865---22485678852894470349996134101122233--21101464
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEEEEECHHHHHHHHHHHHHCC
Q ss_conf 00134565410000000122346554321113355555553034301013432024420457861237899999999639
Q gi|254780608|r 184 WSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQLRVHALHMG 263 (346)
Q Consensus 184 ~Aiv~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~slv~~~l~TGR~HQIRvhl~~~g 263 (346)
++.+.|.+.+.. +. .+.+. + ..+++.+.+.+..++.. +. +.+++.|.|||+||||+||+++|
T Consensus 76 ~v~v~~~~~~~~--~~-~l~~~----------v---~~~g~~~~~~~~~~~~~-~~-~~~~i~l~tGR~hQIR~~~~~~g 137 (174)
T d1vioa1 76 LVTLADPVEENY--SA-ACAEG----------I---LLRGEKEPTKPAKLEIL-DD-YNVNLTISEGRYHQVKRMFAALG 137 (174)
T ss_dssp EEEESSCCCTTH--HH-HHHHC----------C---CCTTCSSCCCCCEEEEC-SS-SEEEEEESCCCTTHHHHHHHHTT
T ss_pred EEEEECCCCHHH--HH-HHHCC----------C---EECCCCCCCEEEEECCC-CC-CEEEEEEECCCCHHHHHHHHHCC
T ss_conf 368712531125--78-98679----------3---50685013155310025-68-47999980364658999998749
Q ss_pred CCEECCC--CCCC
Q ss_conf 8000464--4466
Q gi|254780608|r 264 CPIVGDH--KYCA 274 (346)
Q Consensus 264 ~PivGD~--~Yg~ 274 (346)
|||++-. .||+
T Consensus 138 ~pI~~L~Ri~~g~ 150 (174)
T d1vioa1 138 NKVVGLHRWKIGD 150 (174)
T ss_dssp CCEEEEEEEEETT
T ss_pred CEEEEEEEEEECC
T ss_conf 7897999999856
No 4
>d1kska4 d.265.1.3 (A:60-231) Ribosomal small subunit pseudouridine 516 synthase RsuA {Escherichia coli [TaxId: 562]}
Probab=99.87 E-value=3.6e-23 Score=163.28 Aligned_cols=144 Identities=17% Similarity=0.215 Sum_probs=99.5
Q ss_pred EEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 68841765311223578533233201101111100133354453422240462123101222102333322111200013
Q gi|254780608|r 108 IYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWSLV 187 (346)
Q Consensus 108 livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~Aiv 187 (346)
++++|||+|+.|+........+.+.+ ......+..+|||||++|||+|||+.+.+.++.|.... ..+.|+|+|.|
T Consensus 3 yi~lNKP~G~l~s~~~~~~~~~~~~l---~~~~~~~l~~vgRLD~~tsGLlL~tndg~~~~~l~~~~--~~i~k~Y~v~v 77 (172)
T d1kska4 3 YFMLNKPQGYVCSTDDPDHPTVLYFL---DEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRITSPR--HHCEKTYLVTL 77 (172)
T ss_dssp EEEEEECTTCBSSSSCSSSCBGGGGC---CCTTGGGCEESSCCCTTCEEEEEEESCHHHHHHHHCTT--SCCCEEEEEEE
T ss_pred EEEEECCCCEEECCCCCCCCCEEEEC---CCCCCCCEEEEECCCCCCCCCEEEECCCCEEEEECCCC--CCCCEEEEEEE
T ss_conf 99998999789797398999378865---75236767896137860036399904564154311223--24627999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEEEEECHHHHHHHHHHHHHCCCCEE
Q ss_conf 45654100000001223465543211133555555530343010134320244204578612378999999996398000
Q gi|254780608|r 188 WGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQLRVHALHMGCPIV 267 (346)
Q Consensus 188 ~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~slv~~~l~TGR~HQIRvhl~~~g~Piv 267 (346)
.|.+..... . .+.+ .+ .-++..+.+.+..++... . +.+++.+.|||+||||+||+++|+||+
T Consensus 78 ~~~i~~~~~--~-~l~~----------gv---~i~~~~~~~~~~~v~~~~-~-~~l~i~l~~Gr~~qIR~~~~~lg~~V~ 139 (172)
T d1kska4 78 ESPVADDTA--E-QFAK----------GV---QLHNEKDLTKPAVLEVIT-P-TQVRLTISEGRYHQVKRMFAAVGNHVV 139 (172)
T ss_dssp SSCCCTTHH--H-HHHH----------CC---CCTTCSSCCCCCEEEEEE-T-TEEEEEESCCCTTHHHHHHHHTTCCEE
T ss_pred ECCCCHHHH--H-HHHC----------CE---EECCCCCCCCCEEEEECC-C-CEEEEEEECCCCHHHHHHHHHCCCEEE
T ss_conf 226897898--8-8636----------55---776851111525885146-7-599999944853899999997598894
Q ss_pred C--CCCCCC
Q ss_conf 4--644466
Q gi|254780608|r 268 G--DHKYCA 274 (346)
Q Consensus 268 G--D~~Yg~ 274 (346)
. -..||+
T Consensus 140 ~L~Rv~~G~ 148 (172)
T d1kska4 140 ELHRERIGG 148 (172)
T ss_dssp EEEEEEETT
T ss_pred EEEEEEECC
T ss_conf 999999836
No 5
>d1dm9a_ d.66.1.3 (A:) Heat shock protein 15 kD {Escherichia coli [TaxId: 562]}
Probab=98.63 E-value=3.8e-08 Score=68.53 Aligned_cols=54 Identities=15% Similarity=0.244 Sum_probs=46.5
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHCCCCEECCEEECCCCCCCCCCEEEEECC
Q ss_conf 686689999987678898999999984990388788451121179988999356
Q gi|254780608|r 17 ENMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRVKFNNRIQSGQVVRIPPV 70 (346)
Q Consensus 17 ~g~RLd~~L~~~~~~~sr~~~~~lir~G~V~VNG~~vk~~~~v~~GD~I~i~~~ 70 (346)
+.||||+||-..--.-||+.++++|.+|.|+|||+++|+++.|+.||+|.|...
T Consensus 3 ~~mRlD~~L~~~r~~ktR~~A~~~i~~G~V~vNg~~vKps~~vk~GDvI~i~~~ 56 (104)
T d1dm9a_ 3 VEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 56 (104)
T ss_dssp TCCBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCTTCBCCTTCEEEEEET
T ss_pred CCEEHHHHHHHHHHHHHHHHHHHHHHCCCEEECCEECCCCCCCCCCCEEEEEEC
T ss_conf 637689999982217209999999983971548741455556899999999868
No 6
>d1kska3 d.66.1.5 (A:1-59) Pseudouridine synthase RsuA N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=98.55 E-value=4.2e-08 Score=68.28 Aligned_cols=49 Identities=20% Similarity=0.284 Sum_probs=45.7
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHCCCCEECCEEE-CCCCCCCCCCEEEEE
Q ss_conf 66899999876788989999999849903887884-511211799889993
Q gi|254780608|r 19 MRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRV-KFNNRIQSGQVVRIP 68 (346)
Q Consensus 19 ~RLd~~L~~~~~~~sr~~~~~lir~G~V~VNG~~v-k~~~~v~~GD~I~i~ 68 (346)
||||+||+... .+||++++++|++|.|+|||+.+ ++++.|.++|.|.+.
T Consensus 1 mRLdk~l~~~~-~~SR~~a~~lI~~g~V~Vng~~v~~~~~~V~~~d~I~~d 50 (59)
T d1kska3 1 MRLDKFIAQQL-GVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYD 50 (59)
T ss_dssp EEHHHHHHHHH-TCCHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEET
T ss_pred CCHHHHHHHCC-CCCHHHHHHHHHCCCEEECCEEEECCCCCCCCCCEEEEC
T ss_conf 94899998858-879999999997691898999962598694999999999
No 7
>d1vioa2 d.66.1.5 (A:0-57) Pseudouridine synthase RsuA N-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=98.52 E-value=6.1e-08 Score=67.27 Aligned_cols=50 Identities=18% Similarity=0.319 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHCCCCEECCEEEC-CCCCCCCCCEEEEE
Q ss_conf 8668999998767889899999998499038878845-11211799889993
Q gi|254780608|r 18 NMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRVK-FNNRIQSGQVVRIP 68 (346)
Q Consensus 18 g~RLd~~L~~~~~~~sr~~~~~lir~G~V~VNG~~vk-~~~~v~~GD~I~i~ 68 (346)
.||||+||++.. ..||++++++|++|+|+|||+.++ +++.|..||.|.+.
T Consensus 1 smRLD~~Ls~~~-~~SR~~a~~lI~~g~V~Vng~~v~~~~~~v~~~d~I~~~ 51 (58)
T d1vioa2 1 SLRLDKFIAENV-GLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFE 51 (58)
T ss_dssp CEEHHHHHHHHH-TCCHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEET
T ss_pred CCHHHHHHHHCC-CCCHHHHHHHHHCCEEEECCEEECCCCCCCCCCCEEEEC
T ss_conf 927999999858-978999999998592899999947788798999999999
No 8
>d1p9ka_ d.66.1.6 (A:) Hypothetical protein YbcJ {Escherichia coli [TaxId: 562]}
Probab=98.14 E-value=3.4e-07 Score=62.57 Aligned_cols=66 Identities=18% Similarity=0.144 Sum_probs=53.7
Q ss_pred CCCCCEEEEEECHHHCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCEECCEEE-CCCCCCCCCCEEEEE
Q ss_conf 7668304999841136866899999876788989999999849903887884-511211799889993
Q gi|254780608|r 2 SLMTYVQYVVVENDEENMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRV-KFNNRIQSGQVVRIP 68 (346)
Q Consensus 2 ~~M~~~~~~~V~~~~~g~RLd~~L~~~~~~~sr~~~~~lir~G~V~VNG~~v-k~~~~v~~GD~I~i~ 68 (346)
.-|+.+..|... +...+|||+||+..-=--||++++++|+.|+|+|||+++ +++++|..||.|.+.
T Consensus 5 ~~~~~m~~~~~~-~~~~irL~k~L~~~gl~~Sr~eAk~lI~~G~V~VNG~~~~~p~~~V~~~d~I~vd 71 (79)
T d1p9ka_ 5 HRMSNMATFSLG-KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 71 (79)
T ss_dssp CSSCCCCEEECC-SCSCCCHHHHHHHHTSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSEEEEET
T ss_pred CCCCCCCEEECC-CCCCEEHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCEEEEC
T ss_conf 123587207869-9982889999987788468999999999398603998936456349999999999
No 9
>d2gy9d1 d.66.1.2 (D:2-205) Ribosomal protein S4 {Escherichia coli [TaxId: 562]}
Probab=97.85 E-value=1.5e-05 Score=52.17 Aligned_cols=52 Identities=15% Similarity=0.128 Sum_probs=44.4
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHCCCCEECCEEEC-CCCCCCCCCEEEEECC
Q ss_conf 668999998767889899999998499038878845-1121179988999356
Q gi|254780608|r 19 MRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRVK-FNNRIQSGQVVRIPPV 70 (346)
Q Consensus 19 ~RLd~~L~~~~~~~sr~~~~~lir~G~V~VNG~~vk-~~~~v~~GD~I~i~~~ 70 (346)
+|||..+-+.==..|+.+++++|..|.|.|||+++. |++.|+.||+|.+-..
T Consensus 94 ~RLDnvv~R~gfa~t~~~ARQ~v~Hghi~VNgk~VnIPSy~vk~GDvIsvkek 146 (204)
T d2gy9d1 94 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREK 146 (204)
T ss_dssp TBHHHHHHHHTSSSSHHHHHHHHHTTCEEESSSBCCCTTCBCCTTCBEEECTT
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHCCEECCCEEEEECCEEECCCCEEEECCC
T ss_conf 98888876056202489999999851164198899750076058977886221
No 10
>d1c06a_ d.66.1.2 (A:) Ribosomal protein S4 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=97.80 E-value=2.3e-05 Score=50.99 Aligned_cols=51 Identities=22% Similarity=0.290 Sum_probs=43.9
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHCCCCEECCEEEC-CCCCCCCCCEEEEEC
Q ss_conf 668999998767889899999998499038878845-112117998899935
Q gi|254780608|r 19 MRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRVK-FNNRIQSGQVVRIPP 69 (346)
Q Consensus 19 ~RLd~~L~~~~~~~sr~~~~~lir~G~V~VNG~~vk-~~~~v~~GD~I~i~~ 69 (346)
+|||..+-+.==..|+.++++++..|.|.|||+++. |++.|++||+|.+..
T Consensus 51 ~RlD~vv~r~gfa~t~~~arQ~v~Hghi~vNgk~v~iPSy~vk~GDvIsvke 102 (159)
T d1c06a_ 51 SRLDNLVYRLGLARTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQTIAVRE 102 (159)
T ss_dssp HCHHHHHHHHTSSSSHHHHHHHHHTSCEEETTEECCCSSCCCCSSCEEEECG
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHCCEECCCEEEEECCEEECCCCEEEECC
T ss_conf 8754551057632788889988873563713359985121522784886120
No 11
>d2uubd1 d.66.1.2 (D:2-209) Ribosomal protein S4 {Thermus thermophilus [TaxId: 274]}
Probab=97.72 E-value=4.1e-05 Score=49.45 Aligned_cols=52 Identities=19% Similarity=0.316 Sum_probs=44.2
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHCCCCEECCEEEC-CCCCCCCCCEEEEECC
Q ss_conf 668999998767889899999998499038878845-1121179988999356
Q gi|254780608|r 19 MRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRVK-FNNRIQSGQVVRIPPV 70 (346)
Q Consensus 19 ~RLd~~L~~~~~~~sr~~~~~lir~G~V~VNG~~vk-~~~~v~~GD~I~i~~~ 70 (346)
+|||..+-+.-=..|+.++++++..|.|.|||+++. |++.|++||+|.+-..
T Consensus 98 ~Rld~vv~r~g~a~t~~~ARQ~v~Hg~i~vNg~~v~ips~~~~~gd~I~vrek 150 (208)
T d2uubd1 98 SRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEK 150 (208)
T ss_dssp TBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCBCCTTCEEEECGG
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHCCEECCCEEEEECCEEECCCCEEEHHHC
T ss_conf 99999998536201289888998735742288399862679428862001110
No 12
>d1k8wa5 d.265.1.2 (A:9-250) Pseudouridine synthase II TruB {Escherichia coli [TaxId: 562]}
Probab=96.85 E-value=0.00016 Score=45.64 Aligned_cols=70 Identities=19% Similarity=0.253 Sum_probs=46.3
Q ss_pred CCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf 85688417653112235785332332011011111001333544534222404621231012221023333221112000
Q gi|254780608|r 106 SKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWS 185 (346)
Q Consensus 106 ~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~A 185 (346)
+.|++||||+|+.+|- +...+....+ ..+.+-...||--.||+|+++-++ +.+.+.. |. .-.|+|.|
T Consensus 4 ~G~l~v~KP~g~tS~~-------vv~~~k~~l~--~kKvGh~GTLDP~AsGvL~i~ig~-aTK~~~~-~~--~~~K~Y~~ 70 (242)
T d1k8wa5 4 NGVLLLDKPQGMSSND-------ALQKVKRIYN--ANRAGHTGALDPLATGMLPICLGE-ATKFSQY-LL--DSDKRYRV 70 (242)
T ss_dssp CEEEEEEECTTCCHHH-------HHHHHHHHTT--CSCEEESSCCCTTCEEEEEEEEGG-GGGGTHH-HH--TSCEEEEE
T ss_pred CEEEEEECCCCCCHHH-------HHHHHHHHHC--CCCCCCCCCCCCCCCCEEEEEECH-HHHHHHH-HH--HHHHEEEE
T ss_conf 6799996699899899-------9999999828--775784774798661107999763-3444355-43--21131159
Q ss_pred CCC
Q ss_conf 134
Q gi|254780608|r 186 LVW 188 (346)
Q Consensus 186 iv~ 188 (346)
.+.
T Consensus 71 ~i~ 73 (242)
T d1k8wa5 71 IAR 73 (242)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 999
No 13
>d1r3ea2 d.265.1.2 (A:10-237) Pseudouridine synthase II TruB {Thermotoga maritima [TaxId: 2336]}
Probab=96.73 E-value=0.00037 Score=43.42 Aligned_cols=70 Identities=20% Similarity=0.376 Sum_probs=46.5
Q ss_pred CCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf 85688417653112235785332332011011111001333544534222404621231012221023333221112000
Q gi|254780608|r 106 SKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWS 185 (346)
Q Consensus 106 ~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~A 185 (346)
+.+++||||+|+.+|- +...+..... ..+.+-..+||--.||||+++-++.+ .+...+.+ ..|+|.|
T Consensus 3 ~G~l~i~Kp~g~tS~~-------~v~~vk~~l~--~~KvGh~GTLDP~AsGvL~i~ig~~t--kl~~~~~~--~~K~Y~~ 69 (228)
T d1r3ea2 3 HGILVAYKPKGPTSHD-------VVDEVRKKLK--TRKVGHGGTLDPFACGVLIIGVNQGT--RILEFYKD--LKKVYWV 69 (228)
T ss_dssp CEEEEEEECSSSCHHH-------HHHHHHHHTT--CSCEEESSCCCTTCEEEEEEEEGGGG--GGGGGGTT--SCEEEEE
T ss_pred CEEEEEECCCCCCHHH-------HHHHHHHHHC--CCCCCCCCCCCCCCEEEEEEEECCCC--CCHHHHHC--CCCEEEE
T ss_conf 6499996799889899-------9999999857--77567573369745123799871111--32045520--6523899
Q ss_pred CCC
Q ss_conf 134
Q gi|254780608|r 186 LVW 188 (346)
Q Consensus 186 iv~ 188 (346)
.+.
T Consensus 70 ~~~ 72 (228)
T d1r3ea2 70 KMR 72 (228)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 999
No 14
>d1sgva2 d.265.1.2 (A:3-235) Pseudouridine synthase II TruB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=96.60 E-value=0.00049 Score=42.61 Aligned_cols=70 Identities=23% Similarity=0.356 Sum_probs=46.3
Q ss_pred CCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf 85688417653112235785332332011011111001333544534222404621231012221023333221112000
Q gi|254780608|r 106 SKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWS 185 (346)
Q Consensus 106 ~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~A 185 (346)
..+++||||.|+.+|- +...+....+ ..+.+-.++||--.||+|+++-+. +.+ +...|.+ -.|+|.|
T Consensus 4 ~G~l~v~KP~G~TS~~-------~v~~vk~~~~--~kKvGh~GTLDP~AtGvL~i~ig~-aTK-~~~~~~~--~~K~Y~~ 70 (233)
T d1sgva2 4 PGIVVIDKPAGMTSHD-------VVGRCRRIFA--TRRVGHAGTLDPMATGVLVIGIER-ATK-ILGLLTA--APKSYAA 70 (233)
T ss_dssp SEEEEEEECTTCCHHH-------HHHHHHHHTT--CSCEEESSCCCTTCEEEEEEEEGG-GGG-GGGGTTT--SCEEEEE
T ss_pred CEEEEEECCCCCCHHH-------HHHHHHHHHC--CCCCCCCCCCCCCCEEEEEEEECH-HHH-HHHHHCC--CCEEEEE
T ss_conf 7799997699899899-------9999999858--684666867897653358998646-654-2213136--7548999
Q ss_pred CCC
Q ss_conf 134
Q gi|254780608|r 186 LVW 188 (346)
Q Consensus 186 iv~ 188 (346)
.+.
T Consensus 71 ~~~ 73 (233)
T d1sgva2 71 TIR 73 (233)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 999
No 15
>d2apoa2 d.265.1.2 (A:17-246) Pseudouridine synthase II TruB {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=96.26 E-value=0.0011 Score=40.54 Aligned_cols=70 Identities=24% Similarity=0.350 Sum_probs=47.6
Q ss_pred CCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf 85688417653112235785332332011011111001333544534222404621231012221023333221112000
Q gi|254780608|r 106 SKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWS 185 (346)
Q Consensus 106 ~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~A 185 (346)
..+++||||.|+.+|. +...+....+ ..+.+-..-||--.||||++|-++.+ .+...|.. -.|+|.|
T Consensus 29 ~G~l~idKP~G~TS~~-------vv~~ikk~l~--~kKvGH~GTLDP~AtGvL~v~iG~aT--Kl~~~~~~--~~K~Y~~ 95 (230)
T d2apoa2 29 YGVVVVDKPRGPTSHE-------VSTWVKKILN--LDKAGHGGTLDPKVTGVLPVALERAT--KTIPMWHI--PPKEYVC 95 (230)
T ss_dssp TEEEEEEECSSSCHHH-------HHHHHHHHTT--CSCEEESSCCCTTCEEEEEEEEGGGG--GGGGGTTS--SCEEEEE
T ss_pred CCEEEEECCCCCCHHH-------HHHHHHHHCC--CCCCCCCCCCCCCCEEEEEEEECHHH--HHHHHHHC--CCCEEEE
T ss_conf 8289997899898899-------9999999718--78877665467201246666533888--99999841--6845999
Q ss_pred CCC
Q ss_conf 134
Q gi|254780608|r 186 LVW 188 (346)
Q Consensus 186 iv~ 188 (346)
.+.
T Consensus 96 ~~~ 98 (230)
T d2apoa2 96 LMH 98 (230)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 999
No 16
>d2ey4a2 d.265.1.2 (A:8-252) Pseudouridine synthase II TruB {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=96.23 E-value=0.00072 Score=41.60 Aligned_cols=70 Identities=23% Similarity=0.340 Sum_probs=47.4
Q ss_pred CCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf 85688417653112235785332332011011111001333544534222404621231012221023333221112000
Q gi|254780608|r 106 SKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWS 185 (346)
Q Consensus 106 ~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~A 185 (346)
..+++||||.|+.+|- +...+..... ..+.+-...||-..||||+++-++.+ .+...|. ...|+|.|
T Consensus 42 ~G~l~idKP~G~TS~~-------vv~~vkk~l~--~kKvGH~GTLDP~AtGvL~i~iG~aT--Kl~~~~~--~~~K~Y~~ 108 (245)
T d2ey4a2 42 FGVINLDKPPGPTSHE-------VVAWIKKILN--LEKAGHGGTLDPKVSGVLPVALEKAT--RVVQALL--PAGKEYVA 108 (245)
T ss_dssp TEEEEEEECSSSCHHH-------HHHHHHHHTT--CSCEEESSCCCTTCEEEEEEEEGGGG--GGHHHHT--TSCEEEEE
T ss_pred CCEEEEECCCCCCHHH-------HHHHHHHHHC--CCCCCCCCCCCCCCEEEEEEEECHHH--HHHHHHC--CCCCEEEE
T ss_conf 8289996799798899-------9999998717--67777576589751556788844888--8999966--17848999
Q ss_pred CCC
Q ss_conf 134
Q gi|254780608|r 186 LVW 188 (346)
Q Consensus 186 iv~ 188 (346)
.+.
T Consensus 109 ~~~ 111 (245)
T d2ey4a2 109 LMH 111 (245)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 888
No 17
>d1h3fa2 d.66.1.4 (A:352-432) Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=95.25 E-value=0.011 Score=34.04 Aligned_cols=56 Identities=11% Similarity=0.140 Sum_probs=40.2
Q ss_pred EEECHHH---CCCCHHHHHHHHCCCCCHHHHHHHHHCCCCEECCEEEC-CCCCCCCCCEE
Q ss_conf 9984113---68668999998767889899999998499038878845-11211799889
Q gi|254780608|r 10 VVVENDE---ENMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRVK-FNNRIQSGQVV 65 (346)
Q Consensus 10 ~~V~~~~---~g~RLd~~L~~~~~~~sr~~~~~lir~G~V~VNG~~vk-~~~~v~~GD~I 65 (346)
+.++..+ .++.|..+|...=-.-|++.++++|++|.|+|||.++. +++.+..++.+
T Consensus 6 ~~i~~~~~~~~~i~l~~ll~~~gl~~S~searRlI~~g~V~iN~~ki~d~~~~l~~~~~~ 65 (81)
T d1h3fa2 6 VTIPASELKEGRIWVARLFTLAGLTPSNAEARRLIQNRGLRLDGEVLTDPMLQVDLSRPR 65 (81)
T ss_dssp EEECGGGCBTTEEEHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCEEECSSCE
T ss_pred EEECHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEE
T ss_conf 894488944686119999998297768899999998698898999933856255379969
No 18
>d1jh3a_ d.66.1.4 (A:) Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=92.41 E-value=0.18 Score=26.47 Aligned_cols=52 Identities=12% Similarity=0.144 Sum_probs=35.9
Q ss_pred EEECHHHCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCEECCEEEC-CCCCCCCCC
Q ss_conf 998411368668999998767889899999998499038878845-112117998
Q gi|254780608|r 10 VVVENDEENMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRVK-FNNRIQSGQ 63 (346)
Q Consensus 10 ~~V~~~~~g~RLd~~L~~~~~~~sr~~~~~lir~G~V~VNG~~vk-~~~~v~~GD 63 (346)
+.+.. ++..|-.+|...==--|++..+++|++|.|+|||+++. +++.+...|
T Consensus 25 ~~~~~--~~~~l~~ll~~~~l~~S~seaRrlI~~ggv~iN~~kv~d~~~~l~~~~ 77 (99)
T d1jh3a_ 25 FVHEG--GDVPLVELLVSAGISPSKRQAREDIQNGAIYVNGERLQDVGAILTAEH 77 (99)
T ss_dssp EEECS--SCCCHHHHHHHHTSCCSHHHHHHHHHSTTEEETTEECCSTTTCCSSTT
T ss_pred EEECC--CCCCHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCCCCHHH
T ss_conf 79658--998799999984887688999999985998999999328122017757
No 19
>d1fm0d_ d.15.3.1 (D:) Molybdopterin synthase subunit MoaD {Escherichia coli [TaxId: 562]}
Probab=77.18 E-value=2.1 Score=19.80 Aligned_cols=45 Identities=18% Similarity=0.345 Sum_probs=31.2
Q ss_pred HHHHHHHCCCCCHHHHHHHHHCCCC--EECCEEECCCCCCCCCCEEEEECCC
Q ss_conf 9999987678898999999984990--3887884511211799889993565
Q gi|254780608|r 22 DRWFKNHYPHINFVNLQKILRSGQV--RVDKKRVKFNNRIQSGQVVRIPPVI 71 (346)
Q Consensus 22 d~~L~~~~~~~sr~~~~~lir~G~V--~VNG~~vk~~~~v~~GD~I~i~~~~ 71 (346)
-.+|..+++ .++..+..+.+ -+|++.+..++.|+.||.|.+.|+.
T Consensus 32 ~~~L~~~~~-----~~~~~l~~~~~~vavn~~~~~~~~~l~~gdevAi~PPV 78 (81)
T d1fm0d_ 32 RQHMAAQSD-----RWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFPPV 78 (81)
T ss_dssp HHHHHTTCH-----HHHHHHCCTTCEEEETTEECCTTCBCCTTCEEEEECCC
T ss_pred HHHHHHHCC-----HHHHHHCCCCEEEECCCEECCCCCCCCCCCEEEEECCC
T ss_conf 999988580-----48887267828984173256899785998999997998
No 20
>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}
Probab=70.59 E-value=1.3 Score=21.05 Aligned_cols=27 Identities=22% Similarity=0.562 Sum_probs=23.2
Q ss_pred CCEECCEEECCCCCCCCCCEEEEECCC
Q ss_conf 903887884511211799889993565
Q gi|254780608|r 45 QVRVDKKRVKFNNRIQSGQVVRIPPVI 71 (346)
Q Consensus 45 ~V~VNG~~vk~~~~v~~GD~I~i~~~~ 71 (346)
.+.|||+.+..++.|+.||+|.+.|+.
T Consensus 61 ~iavN~~~~~~d~~L~~gDevai~PPV 87 (88)
T d1vjka_ 61 NIAVNGRYVSWDEELKDGDVVGVFPPV 87 (88)
T ss_dssp EEEETTBCCCTTCBCCTTCEEEEESCC
T ss_pred EEEECCEECCCCCCCCCCCEEEEECCC
T ss_conf 999756576999682998999996997
No 21
>d1xo3a_ d.15.3.3 (A:) C9orf74 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=54.69 E-value=1.1 Score=21.44 Aligned_cols=63 Identities=14% Similarity=0.244 Sum_probs=37.0
Q ss_pred EEEECHHHCCCCHH---HHHHHHCCCCCHHHHHH--HHHCC-CCEECCEEEC----CCCCCCCCCEEEEECCC
Q ss_conf 99984113686689---99998767889899999--99849-9038878845----11211799889993565
Q gi|254780608|r 9 YVVVENDEENMRLD---RWFKNHYPHINFVNLQK--ILRSG-QVRVDKKRVK----FNNRIQSGQVVRIPPVI 71 (346)
Q Consensus 9 ~~~V~~~~~g~RLd---~~L~~~~~~~sr~~~~~--lir~G-~V~VNG~~vk----~~~~v~~GD~I~i~~~~ 71 (346)
.+.++...++..+- .+|.+++|...+..+.. -+|.+ .|.|||.-+. .++.|+.||.|.+.|+.
T Consensus 26 ~v~l~~~~~~~TV~dll~~L~~~~p~~~~~l~~~~~~lr~~v~v~vN~~di~~l~gl~t~l~dgDeV~~~p~v 98 (101)
T d1xo3a_ 26 QVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSILFISTL 98 (101)
T ss_dssp EEECCSSSCCCCHHHHHHHHHHHHCCSCGGGSCCTTSCCSSEEEEETTEEHHHHTTTSCCCCTTCEEEEEETT
T ss_pred EEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEEEEECCCCEECCCCCCCCCCCCCEEEEECCC
T ss_conf 8973788887479999999998678510444224767334479997276504057876386997999995787
No 22
>d1rwsa_ d.15.3.2 (A:) Hypothetical protein PF1061 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=54.43 E-value=3.1 Score=18.68 Aligned_cols=45 Identities=24% Similarity=0.383 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHCCCCEECCEEECCCCCCCCCCEEEEECC
Q ss_conf 686689999987678898999999984990388788451121179988999356
Q gi|254780608|r 17 ENMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRVKFNNRIQSGQVVRIPPV 70 (346)
Q Consensus 17 ~g~RLd~~L~~~~~~~sr~~~~~lir~G~V~VNG~~vk~~~~v~~GD~I~i~~~ 70 (346)
.|+++-..|+.. +++++ .--+.+||+.+..+..|+.||.+.+.|.
T Consensus 20 ~g~~v~dvL~~~--gl~~e-------~~vv~~nG~vv~eDe~v~DGD~vei~PV 64 (68)
T d1rwsa_ 20 EGMKVRDILRAV--GFNTE-------SAIAKVNGKVVLEDDEVKDGDFVEVIPV 64 (68)
T ss_dssp SSCCHHHHHHTT--TCSSC-------SSCEEETTEEECSSSCCCSSCCCBCSCC
T ss_pred CCCCHHHHHHHC--CCCCC-------EEEEEECCEEECCCCCCCCCCEEEEEEE
T ss_conf 896999999874--98852-------2899999999158740278999999984
No 23
>d1v8ca1 d.15.3.1 (A:1-87) MoaD-related protein, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=52.05 E-value=6.4 Score=16.69 Aligned_cols=47 Identities=13% Similarity=0.347 Sum_probs=29.3
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHCC------CCEECCEEEC----CCCCCCCCCEEEEECCC
Q ss_conf 899999876788989999999849------9038878845----11211799889993565
Q gi|254780608|r 21 LDRWFKNHYPHINFVNLQKILRSG------QVRVDKKRVK----FNNRIQSGQVVRIPPVI 71 (346)
Q Consensus 21 Ld~~L~~~~~~~sr~~~~~lir~G------~V~VNG~~vk----~~~~v~~GD~I~i~~~~ 71 (346)
|-..|..++|++.. .++..+ .|.|||+.+. .++.|+.||.|.+.|+.
T Consensus 28 ll~~L~~~~p~l~~----~l~~~~~~~~~v~i~vng~~i~~~~~~~~~l~~gdeV~i~Ppv 84 (87)
T d1v8ca1 28 VLENLVRAYPALKE----ELFEGEGLAERVSVFLEGRDVRYLQGLSTPLSPGATLDLFPPV 84 (87)
T ss_dssp HHHHHHHHCGGGHH----HHEETTEECTTCEEEETTEEGGGTTGGGCBCCTTCEEEEECSC
T ss_pred HHHHHHHHCHHHHH----HHCCCCCCCCEEEEEECCEEEECCCCCCCCCCCCCEEEEECCC
T ss_conf 99999878979999----8603456310489998575630356776307998999997888
No 24
>d2hj1a1 d.15.3.4 (A:11-87) Hypothetical protein HI0395 {Haemophilus influenzae [TaxId: 727]}
Probab=42.83 E-value=4.2 Score=17.85 Aligned_cols=38 Identities=13% Similarity=0.445 Sum_probs=26.8
Q ss_pred HHHHCCCCCHHHHHHHHHCCCCEECCEEECCCCCCCCCCEEEEEC
Q ss_conf 998767889899999998499038878845112117998899935
Q gi|254780608|r 25 FKNHYPHINFVNLQKILRSGQVRVDKKRVKFNNRIQSGQVVRIPP 69 (346)
Q Consensus 25 L~~~~~~~sr~~~~~lir~G~V~VNG~~vk~~~~v~~GD~I~i~~ 69 (346)
+...||++.- ..-.+=|=|+.++.++.|+.||+|+|.-
T Consensus 37 i~~~fpeidl-------~~~~vGIfGk~v~~~~~L~~gDRVEIYR 74 (77)
T d2hj1a1 37 ILSQFPEIDL-------STNKIGIFSRPIKLTDVLKEGDRIEIYR 74 (77)
T ss_dssp HHHHCTTCCT-------TTSEEEEEECSCCTTCBCCTTCEEEECC
T ss_pred CHHHCCCCCC-------CCCCEEEECCCCCCCCCCCCCCEEEEEE
T ss_conf 6756966564-------6462707884738877078999999950
No 25
>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=31.41 E-value=5.7 Score=17.02 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=15.1
Q ss_pred EECCEEECCCCCCCCCCEEEE
Q ss_conf 388788451121179988999
Q gi|254780608|r 47 RVDKKRVKFNNRIQSGQVVRI 67 (346)
Q Consensus 47 ~VNG~~vk~~~~v~~GD~I~i 67 (346)
.+||+++..++.|+.||+|+|
T Consensus 53 ~~~g~~v~l~~~L~dgDvVeI 73 (76)
T d1wxqa2 53 ARTKRRVGEDYELQFNDIVKI 73 (76)
T ss_dssp TTTCSBCCTTCCCCTTEEEEE
T ss_pred CCCCEECCCCCCCCCCCEEEE
T ss_conf 759979899758069999999
No 26
>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.96 E-value=14 Score=14.50 Aligned_cols=14 Identities=21% Similarity=0.676 Sum_probs=11.3
Q ss_pred CEEEEECCCEEEEC
Q ss_conf 30786178568841
Q gi|254780608|r 99 SILLYEDSKIYVFN 112 (346)
Q Consensus 99 ~~IiyED~~livin 112 (346)
..+|||||.++|+.
T Consensus 14 ~~ivyede~~~af~ 27 (111)
T d1kpfa_ 14 AKIIFEDDRCLAFH 27 (111)
T ss_dssp CCEEEECSSEEEEE
T ss_pred CCEEEECCCEEEEE
T ss_conf 66899689799986
No 27
>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum [TaxId: 1515]}
Probab=24.63 E-value=18 Score=13.90 Aligned_cols=15 Identities=27% Similarity=0.627 Sum_probs=12.2
Q ss_pred CEEEEECCCEEEECC
Q ss_conf 307861785688417
Q gi|254780608|r 99 SILLYEDSKIYVFNK 113 (346)
Q Consensus 99 ~~IiyED~~livinK 113 (346)
..++||||+++|+.=
T Consensus 16 ~~ivyede~~~af~d 30 (113)
T d1xqua_ 16 STIYYEDERVIAIKD 30 (113)
T ss_dssp BCEEEECSSEEEEEC
T ss_pred CCEEEECCCEEEEEC
T ss_conf 557986897899877
No 28
>d1quba5 g.18.1.1 (A:244-326) beta2-glycoprotein I {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.81 E-value=11 Score=15.13 Aligned_cols=29 Identities=24% Similarity=0.302 Sum_probs=21.8
Q ss_pred HHCCCCEECCEEECC----CCCCCCCCEEEEEC
Q ss_conf 984990388788451----12117998899935
Q gi|254780608|r 41 LRSGQVRVDKKRVKF----NNRIQSGQVVRIPP 69 (346)
Q Consensus 41 ir~G~V~VNG~~vk~----~~~v~~GD~I~i~~ 69 (346)
+++++|..||++++. ...+..||.|.++-
T Consensus 6 ikka~Vly~G~k~~i~d~~~~~ilHGe~VsffC 38 (76)
T d1quba5 6 VKKATVVYQGERVKIQEKFKNGMLHGDKVSFFC 38 (76)
T ss_dssp SSSCEEESSSSEEEHHHHTTTCBCTTCEEEEEE
T ss_pred CEEEEEEECCEEECHHHCCCCCCEECCEEEEEE
T ss_conf 247899987789611350757612077789997
No 29
>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]}
Probab=23.52 E-value=19 Score=13.77 Aligned_cols=45 Identities=11% Similarity=-0.053 Sum_probs=29.1
Q ss_pred HCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCEECCEEECCCCCCCCCCEEEE
Q ss_conf 3686689999987678898999999984990388788451121179988999
Q gi|254780608|r 16 EENMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRVKFNNRIQSGQVVRI 67 (346)
Q Consensus 16 ~~g~RLd~~L~~~~~~~sr~~~~~lir~G~V~VNG~~vk~~~~v~~GD~I~i 67 (346)
..|...-.+.... +.+..++ .=..+|||+.+..++.+..++.|++
T Consensus 15 ~~g~T~~diA~~I----~~~l~k~---avaa~vng~l~dL~~~l~~d~~vei 59 (62)
T d1tkea1 15 DHAVSPMDVALDI----GPGLAKA---CIAGRVNGELVDACDLIENDAQLSI 59 (62)
T ss_dssp SSCBCHHHHHHHH----CHHHHHH---CCEEEETTEEEETTCCBCSCEEEEE
T ss_pred CCCCCHHHHHHHH----CCHHHHE---EEEEEECCEEECCCCCCCCCCEEEE
T ss_conf 8999999999887----8012520---8999999999078858589999999
No 30
>d2exda1 b.40.12.1 (A:72-143) Hypothetical protein PH0471 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=21.63 E-value=20 Score=13.53 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=14.1
Q ss_pred CCCCEECCEE--ECCCCCCCCCCEEEE
Q ss_conf 4990388788--451121179988999
Q gi|254780608|r 43 SGQVRVDKKR--VKFNNRIQSGQVVRI 67 (346)
Q Consensus 43 ~G~V~VNG~~--vk~~~~v~~GD~I~i 67 (346)
.|.|+++|.. +..+..+..|+.|+|
T Consensus 30 ~G~V~v~Ge~W~A~s~~~i~~G~~V~V 56 (72)
T d2exda1 30 HYLVEVEGDKWIAYSDEKLSLGDRVMV 56 (72)
T ss_dssp CEEEEETTEEEEECCSSCCCTTCEEEE
T ss_pred CEEEEECCEEEEEEECCCCCCCCEEEE
T ss_conf 899999998999985986589999999
No 31
>d1klla_ d.32.1.2 (A:) Mitomycin resistance protein D, MRD {Streptomyces lavendulae [TaxId: 1914]}
Probab=21.62 E-value=20 Score=13.53 Aligned_cols=46 Identities=20% Similarity=0.215 Sum_probs=33.8
Q ss_pred HHHHHHHHHHCCCCEECCCCCCCCCCCHHCCCCCCCHHHHHHHHEEECCCCCEEEEECCCC
Q ss_conf 8999999996398000464446652210001344624131100043758896499983997
Q gi|254780608|r 252 THQLRVHALHMGCPIVGDHKYCANFKGNFTSPIQNKLYLHARYMDLPHPEGGRLQITAPLP 312 (346)
Q Consensus 252 ~HQIRvhl~~~g~PivGD~~Yg~~~~~~~~~~~~~r~~LHa~~l~f~hp~~~~~~~~aplP 312 (346)
-...-..+...|.++++.+...+.. .+...|..|++..++|.+|+|
T Consensus 83 l~~~~~~l~~~G~~~~~~p~~~~~G---------------~~~~~~~DPdG~~iel~~p~p 128 (128)
T d1klla_ 83 VDKKYAELVDAGYEGHLKPWNAVWG---------------QRYAIVKDPDGNVVDLFAPLP 128 (128)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECTTS---------------EEEEEEECTTSCEEEEEEECC
T ss_pred HHHHHHHHHHCCCCCCCCCEECCCC---------------CEEEEEECCCCCEEEEEECCC
T ss_conf 6789999986468545497586798---------------599999989999999983599
Done!