BLAST/PSIBLAST alignment of GI: 254780608 and GI: 116252313 at iteration 1
>gi|116252313|ref|YP_768151.1| ribosomal large subunit pseudouridine synthase C [Rhizobium leguminosarum bv. viciae 3841] Length = 330
>gi|115256961|emb|CAK08055.1| putative ribosomal large subunit pseudouridine synthase C [Rhizobium leguminosarum bv. viciae 3841] Length = 330
Score = 362 bits (930), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 165/322 (51%), Positives = 231/322 (71%), Gaps = 3/322 (0%)
Query: 4 MTYVQYVVVENDEENMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRVKFNNRIQSGQ 63
M ++++ VE DE MRLDRWFK H+P + F LQK+LRSGQVRVD RVK + R+Q GQ
Sbjct: 1 MAGIEHIKVEPDEAGMRLDRWFKVHFPGLGFGPLQKLLRSGQVRVDGGRVKSDARVQPGQ 60
Query: 64 VVRIPPVINALNHIIKEQKILDSSVNLTKHSDFLKSILLYEDSKIYVFNKPAGISVQGGS 123
VR+PP+ ++ +K I + + + L ++L+ED K+ V NKP G++VQGGS
Sbjct: 61 TVRVPPM--DVDAKLKSGPIAGKDLKHSTDFELLSRMVLHEDEKVIVLNKPPGLAVQGGS 118
Query: 124 GIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIY 183
G+A HID L++W KG+KPRL HRLD++TSG+LV+ARTR AAQ LT +FR R +K Y
Sbjct: 119 GVARHIDQMLEAWTSPKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRERDTKKTY 178
Query: 184 WSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWL 243
W+LV G+P+ ++ I+ WL+K+ GD + + K E GA++AIS ++V++ AQ WL
Sbjct: 179 WALVKGVPRKHEDKISTWLVKEPTADGDRMRIAKHGEDGADHAISFYRVLETAAQNLAWL 238
Query: 244 EMQPHTGRTHQLRVHALHMGCPIVGDHKYCANFKG-NFTSPIQNKLYLHARYMDLPHPEG 302
EM+P+TGRTHQLRVHALH+G PI+GD KY + +F +Q KL+LHAR++D+PHP G
Sbjct: 239 EMEPYTGRTHQLRVHALHIGHPIIGDPKYFDDDPNWDFPGGVQKKLHLHARHIDIPHPSG 298
Query: 303 GRLQITAPLPAHMVKTWDSLGF 324
GRL+++APLP+HMV+TW+ LG
Sbjct: 299 GRLRVSAPLPSHMVQTWNLLGL 320