BLAST/PSIBLAST alignment of GI: 254780608 and GI: 116252313 at iteration 1
>gi|116252313|ref|YP_768151.1| ribosomal large subunit pseudouridine synthase C [Rhizobium leguminosarum bv. viciae 3841] Length = 330
>gi|115256961|emb|CAK08055.1| putative ribosomal large subunit pseudouridine synthase C [Rhizobium leguminosarum bv. viciae 3841] Length = 330
 Score =  362 bits (930), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 165/322 (51%), Positives = 231/322 (71%), Gaps = 3/322 (0%)

Query: 4   MTYVQYVVVENDEENMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRVKFNNRIQSGQ 63
           M  ++++ VE DE  MRLDRWFK H+P + F  LQK+LRSGQVRVD  RVK + R+Q GQ
Sbjct: 1   MAGIEHIKVEPDEAGMRLDRWFKVHFPGLGFGPLQKLLRSGQVRVDGGRVKSDARVQPGQ 60

Query: 64  VVRIPPVINALNHIIKEQKILDSSVNLTKHSDFLKSILLYEDSKIYVFNKPAGISVQGGS 123
            VR+PP+   ++  +K   I    +  +   + L  ++L+ED K+ V NKP G++VQGGS
Sbjct: 61  TVRVPPM--DVDAKLKSGPIAGKDLKHSTDFELLSRMVLHEDEKVIVLNKPPGLAVQGGS 118

Query: 124 GIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIY 183
           G+A HID  L++W   KG+KPRL HRLD++TSG+LV+ARTR AAQ LT +FR R  +K Y
Sbjct: 119 GVARHIDQMLEAWTSPKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRERDTKKTY 178

Query: 184 WSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWL 243
           W+LV G+P+  ++ I+ WL+K+    GD + + K  E GA++AIS ++V++  AQ   WL
Sbjct: 179 WALVKGVPRKHEDKISTWLVKEPTADGDRMRIAKHGEDGADHAISFYRVLETAAQNLAWL 238

Query: 244 EMQPHTGRTHQLRVHALHMGCPIVGDHKYCANFKG-NFTSPIQNKLYLHARYMDLPHPEG 302
           EM+P+TGRTHQLRVHALH+G PI+GD KY  +    +F   +Q KL+LHAR++D+PHP G
Sbjct: 239 EMEPYTGRTHQLRVHALHIGHPIIGDPKYFDDDPNWDFPGGVQKKLHLHARHIDIPHPSG 298

Query: 303 GRLQITAPLPAHMVKTWDSLGF 324
           GRL+++APLP+HMV+TW+ LG 
Sbjct: 299 GRLRVSAPLPSHMVQTWNLLGL 320