PSIBLAST alignment of GI: 254780608 and protein with PDB id: 1prz
>gi|38492837|pdb|1PRZ|A Chain A, Crystal Structure Of Pseudouridine Synthase Rlud Catalytic Module Length = 252
Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 60/249 (24%), Positives = 98/249 (39%), Gaps = 19/249 (7%)
Query: 92 KHSDFLKSILLYEDSKIYVFNKPAGISVQGGSGIAYHIDGF---LKSWVDSKGQKPRLTH 148
+ ++YED I V NKP + V G+G + + + H
Sbjct: 3 FEPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVH 62
Query: 149 RLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWSLVWGIPKNKKECIANWLLKKSHI 208
RLD++T+G+ VVA+T A L ES + R I + Y ++ G
Sbjct: 63 RLDKDTTGLXVVAKTVPAQTRLVESLQRREITREYEAVAIGHXTAGGTVDE------PIS 116
Query: 209 GGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQLRVHALHMGCPIVG 268
A++H+++ + F L ++ TGRTHQ+RVH H+ P+VG
Sbjct: 117 RHPTKRTHXAVHPXGKPAVTHYRIXEHFRVHTR-LRLRLETGRTHQIRVHXAHITHPLVG 175
Query: 269 DHKYCANFKGNF--------TSPIQNKLYLHARYMDLPHPEGG-RLQITAPLPAHMVKTW 319
D Y + T ++ LHA + L HP G + AP+P V+
Sbjct: 176 DPVYGGRPRPPKGASEAFISTLRKFDRQALHATXLRLYHPISGIEXEWHAPIPQDXVELI 235
Query: 320 DSLGFKYDR 328
+ ++
Sbjct: 236 EVXRADFEE 244