PSIBLAST alignment of GI: 254780608 and protein with PDB id: 1qyu

>gi|40889481|pdb|1QYU|A Chain A, Structure Of The Catalytic Domain Of 23s Rrna Pseudouridine Synthase Rlud Length = 349

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 72/331 (21%), Positives = 125/331 (37%), Gaps = 35/331 (10%)

Query: 11  VVENDEENMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRV-KFNNRIQSGQVVRIPP 69
            V  ++   RLD+     +P  +   +++ +   +V V+ K   K   ++  G+ V I  
Sbjct: 33  TVSENQLGQRLDQALAEXFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 92

Query: 70  VINALNHIIKEQKILDSSVNLTKHSDFLKSILLYEDSKIYVFNKPAGISVQGGSGIAYHI 129
            I                         +   ++YED  I + NKP  + V  G+G     
Sbjct: 93  EIEEEARF---------------EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGT 137

Query: 130 DGF---LKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWSL 186
                       +   +  + HRLD++T+G+ VVA+T  A   L ES + R I + Y ++
Sbjct: 138 VLNALLHYYPPIADVPRAGIVHRLDKDTTGLXVVAKTVPAQTRLVESLQRREITREYEAV 197

Query: 187 VWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQ 246
             G                                    A++H+++ + F      L ++
Sbjct: 198 AIGHXTAGGTVDE------PISRHPTKRTHXAVHPMGKPAVTHYRIXEHFRV-HTRLRLR 250

Query: 247 PHTGRTHQLRVHALHMGCPIVGDHKYCANFKGNF--------TSPIQNKLYLHARYMDLP 298
             TGRTHQ+RVH  H+  P+VGD  Y    +           T    ++  LHA  + L 
Sbjct: 251 LETGRTHQIRVHXAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATXLRLY 310

Query: 299 HPEGG-RLQITAPLPAHMVKTWDSLGFKYDR 328
           HP  G   +  AP+P   V+  +     ++ 
Sbjct: 311 HPISGIEXEWHAPIPQDXVELIEVXRADFEE 341