RPSBLAST alignment of GI: 254780608 and protein with PDBid: 1ksk

>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A* Length = 234
 Score = 57.5 bits (138), Expect = 4e-09
 Identities = 35/254 (13%), Positives = 71/254 (27%), Gaps = 51/254 (20%)

Query: 17  ENMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRVKFNNRIQSGQVVRIPPVINALNH 76
            +MRLD++       ++     + +R  +V VD            G++VR         H
Sbjct: 2   SHMRLDKFIAQQL-GVSRAIAGREIRGNRVTVD------------GEIVRNAAFKLLPEH 48

Query: 77  IIKEQKILDSSVNLTKHSDFLKSILLYEDSKIYVFNKPAGISVQGGSGIAYHIDGFLKSW 136
            +                     +      + ++ NKP G            +  F    
Sbjct: 49  DVAYDGNP---------------LAQQHGPRYFMLNKPQGYVCSTDDPDHPTVLYF---L 90

Query: 137 VDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWSLVWGIPKNKKE 196
            +    K     RLD +T+G++++      +  +T        +K Y   +     +   
Sbjct: 91  DEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRIT--SPRHHCEKTYLVTLESPVADDTA 148

Query: 197 CIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQLR 256
                  K   +  +                   K           + +    GR HQ++
Sbjct: 149 E---QFAKGVQLHNEK---------------DLTKPAVLEVITPTQVRLTISEGRYHQVK 190

Query: 257 VHALHMGCPIVGDH 270
                +G  +V  H
Sbjct: 191 RMFAAVGNHVVELH 204