RPSBLAST alignment of GI: 254780608 and protein with PDBid: 1ksk
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A* Length = 234
Score = 57.5 bits (138), Expect = 4e-09
Identities = 35/254 (13%), Positives = 71/254 (27%), Gaps = 51/254 (20%)
Query: 17 ENMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRVKFNNRIQSGQVVRIPPVINALNH 76
+MRLD++ ++ + +R +V VD G++VR H
Sbjct: 2 SHMRLDKFIAQQL-GVSRAIAGREIRGNRVTVD------------GEIVRNAAFKLLPEH 48
Query: 77 IIKEQKILDSSVNLTKHSDFLKSILLYEDSKIYVFNKPAGISVQGGSGIAYHIDGFLKSW 136
+ + + ++ NKP G + F
Sbjct: 49 DVAYDGNP---------------LAQQHGPRYFMLNKPQGYVCSTDDPDHPTVLYF---L 90
Query: 137 VDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWSLVWGIPKNKKE 196
+ K RLD +T+G++++ + +T +K Y + +
Sbjct: 91 DEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRIT--SPRHHCEKTYLVTLESPVADDTA 148
Query: 197 CIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQLR 256
K + + K + + GR HQ++
Sbjct: 149 E---QFAKGVQLHNEK---------------DLTKPAVLEVITPTQVRLTISEGRYHQVK 190
Query: 257 VHALHMGCPIVGDH 270
+G +V H
Sbjct: 191 RMFAAVGNHVVELH 204