BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780608|ref|YP_003065021.1| ribosomal large subunit
pseudouridine synthase C [Candidatus Liberibacter asiaticus str.
psy62]
(346 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780608|ref|YP_003065021.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Liberibacter asiaticus str. psy62]
Length = 346
Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/346 (100%), Positives = 346/346 (100%)
Query: 1 MSLMTYVQYVVVENDEENMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRVKFNNRIQ 60
MSLMTYVQYVVVENDEENMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRVKFNNRIQ
Sbjct: 1 MSLMTYVQYVVVENDEENMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRVKFNNRIQ 60
Query: 61 SGQVVRIPPVINALNHIIKEQKILDSSVNLTKHSDFLKSILLYEDSKIYVFNKPAGISVQ 120
SGQVVRIPPVINALNHIIKEQKILDSSVNLTKHSDFLKSILLYEDSKIYVFNKPAGISVQ
Sbjct: 61 SGQVVRIPPVINALNHIIKEQKILDSSVNLTKHSDFLKSILLYEDSKIYVFNKPAGISVQ 120
Query: 121 GGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQ 180
GGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQ
Sbjct: 121 GGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQ 180
Query: 181 KIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKF 240
KIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKF
Sbjct: 181 KIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKF 240
Query: 241 CWLEMQPHTGRTHQLRVHALHMGCPIVGDHKYCANFKGNFTSPIQNKLYLHARYMDLPHP 300
CWLEMQPHTGRTHQLRVHALHMGCPIVGDHKYCANFKGNFTSPIQNKLYLHARYMDLPHP
Sbjct: 241 CWLEMQPHTGRTHQLRVHALHMGCPIVGDHKYCANFKGNFTSPIQNKLYLHARYMDLPHP 300
Query: 301 EGGRLQITAPLPAHMVKTWDSLGFKYDRNLYIKRLYSQDECKQNIL 346
EGGRLQITAPLPAHMVKTWDSLGFKYDRNLYIKRLYSQDECKQNIL
Sbjct: 301 EGGRLQITAPLPAHMVKTWDSLGFKYDRNLYIKRLYSQDECKQNIL 346
>gi|254780610|ref|YP_003065023.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
[Candidatus Liberibacter asiaticus str. psy62]
Length = 340
Score = 113 bits (283), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 121/252 (48%), Gaps = 30/252 (11%)
Query: 101 LLYEDSKIYVFNKPAGISVQGGSG---------IAYHIDGFLKSWVDSKGQKPRLTHRLD 151
+LYED I V NKPAG+ V G + YH L S K +P + HRLD
Sbjct: 92 ILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVK--RPGIVHRLD 149
Query: 152 QETSGILVVARTRAAAQHLTESF----RMRRIQKIYWSLVWGIPKNKKECIANWLLKKSH 207
++T+G++VVA+ A Q L+E F + R+++ Y+++VWGIP I N L +
Sbjct: 150 KDTTGVMVVAKNDLAHQKLSEQFVDHGKSTRLKRAYYAMVWGIPL-PDSGIINAPLGRCK 208
Query: 208 IGGDYVHVVKQNEKGANYAISHFKVIDCFAQK----FCWLEMQPHTGRTHQLRVHALHMG 263
V ++K A+ AI+H++ I+ + + L+ TGRTHQ+RVH H G
Sbjct: 209 SNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHLETGRTHQIRVHMAHKG 268
Query: 264 CPIVGDHKYCANFK-------GNFTSPIQN--KLYLHARYMDLPHPEGGR-LQITAPLPA 313
P++GD Y FK N S I + + LHA + HP + + P+P
Sbjct: 269 NPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSLSFSHPRNNQDMDFQVPIPE 328
Query: 314 HMVKTWDSLGFK 325
M+ L K
Sbjct: 329 DMLTVIRKLNEK 340
>gi|254780419|ref|YP_003064832.1| aspartyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 622
Score = 30.0 bits (66), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 50/135 (37%), Gaps = 32/135 (23%)
Query: 116 GISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTH---RLDQETSGILVVARTRAAAQHL-- 170
I +GG G D + W S+GQ P L + RLD+ + VA A+HL
Sbjct: 328 AIPAKGGGGNRAFCDR-MNEWARSQGQ-PGLAYIFWRLDESGN----VAGMGPVAKHLNI 381
Query: 171 --TESFRMRRIQKIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAIS 228
TE+ R+R + + C I GD + N+
Sbjct: 382 VNTEAIRVRLDMQ-----------DGDSCF--------FIAGDPLKFCSFAADARNHIAQ 422
Query: 229 HFKVIDCFAQKFCWL 243
+I+C +FCW+
Sbjct: 423 ELGIINCNCFEFCWI 437
>gi|255764496|ref|YP_003065012.2| excinuclease ABC subunit C [Candidatus Liberibacter asiaticus str.
psy62]
Length = 616
Score = 24.3 bits (51), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 124 GIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQ 180
G AY++ +KS++ S R+TH + Q + V T A L E+ ++R++
Sbjct: 26 GKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL-LLEANMIKRLK 81
>gi|254780330|ref|YP_003064743.1| 30S ribosomal protein S18 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 83
Score = 23.9 bits (50), Expect = 4.3, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 44 GQVRVDKKRVKFNNRIQSGQVVRIPPVINALNHIIKEQKILDSSVNLTKH 93
G R+D K ++ NR S + +P I++++H K+Q+ L ++ ++
Sbjct: 27 GAPRIDYKDIRLLNRFLSQRGKIVPSRISSVSH--KKQRELAKAIKRARY 74
>gi|254780466|ref|YP_003064879.1| putative modification methylase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 375
Score = 23.5 bits (49), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 173 SFRMRRIQKIYWSLVWGIPKNKKE 196
+FR RR Q + +L+W P K +
Sbjct: 139 NFRGRRFQNAHETLIWASPSPKAK 162
>gi|254780371|ref|YP_003064784.1| diaminopimelate decarboxylase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 431
Score = 23.5 bits (49), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 117 ISVQGGSGIAYHID 130
I V GG GIAYH D
Sbjct: 234 IDVGGGLGIAYHSD 247
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.323 0.138 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 239,462
Number of Sequences: 1233
Number of extensions: 10496
Number of successful extensions: 22
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 9
length of query: 346
length of database: 328,796
effective HSP length: 75
effective length of query: 271
effective length of database: 236,321
effective search space: 64042991
effective search space used: 64042991
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 39 (19.6 bits)