BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780608|ref|YP_003065021.1| ribosomal large subunit pseudouridine synthase C [Candidatus Liberibacter asiaticus str. psy62] (346 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780608|ref|YP_003065021.1| ribosomal large subunit pseudouridine synthase C [Candidatus Liberibacter asiaticus str. psy62] Length = 346 Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/346 (100%), Positives = 346/346 (100%) Query: 1 MSLMTYVQYVVVENDEENMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRVKFNNRIQ 60 MSLMTYVQYVVVENDEENMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRVKFNNRIQ Sbjct: 1 MSLMTYVQYVVVENDEENMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRVKFNNRIQ 60 Query: 61 SGQVVRIPPVINALNHIIKEQKILDSSVNLTKHSDFLKSILLYEDSKIYVFNKPAGISVQ 120 SGQVVRIPPVINALNHIIKEQKILDSSVNLTKHSDFLKSILLYEDSKIYVFNKPAGISVQ Sbjct: 61 SGQVVRIPPVINALNHIIKEQKILDSSVNLTKHSDFLKSILLYEDSKIYVFNKPAGISVQ 120 Query: 121 GGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQ 180 GGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQ Sbjct: 121 GGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQ 180 Query: 181 KIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKF 240 KIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKF Sbjct: 181 KIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKF 240 Query: 241 CWLEMQPHTGRTHQLRVHALHMGCPIVGDHKYCANFKGNFTSPIQNKLYLHARYMDLPHP 300 CWLEMQPHTGRTHQLRVHALHMGCPIVGDHKYCANFKGNFTSPIQNKLYLHARYMDLPHP Sbjct: 241 CWLEMQPHTGRTHQLRVHALHMGCPIVGDHKYCANFKGNFTSPIQNKLYLHARYMDLPHP 300 Query: 301 EGGRLQITAPLPAHMVKTWDSLGFKYDRNLYIKRLYSQDECKQNIL 346 EGGRLQITAPLPAHMVKTWDSLGFKYDRNLYIKRLYSQDECKQNIL Sbjct: 301 EGGRLQITAPLPAHMVKTWDSLGFKYDRNLYIKRLYSQDECKQNIL 346 >gi|254780610|ref|YP_003065023.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D [Candidatus Liberibacter asiaticus str. psy62] Length = 340 Score = 113 bits (283), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 81/252 (32%), Positives = 121/252 (48%), Gaps = 30/252 (11%) Query: 101 LLYEDSKIYVFNKPAGISVQGGSG---------IAYHIDGFLKSWVDSKGQKPRLTHRLD 151 +LYED I V NKPAG+ V G + YH L S K +P + HRLD Sbjct: 92 ILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVK--RPGIVHRLD 149 Query: 152 QETSGILVVARTRAAAQHLTESF----RMRRIQKIYWSLVWGIPKNKKECIANWLLKKSH 207 ++T+G++VVA+ A Q L+E F + R+++ Y+++VWGIP I N L + Sbjct: 150 KDTTGVMVVAKNDLAHQKLSEQFVDHGKSTRLKRAYYAMVWGIPL-PDSGIINAPLGRCK 208 Query: 208 IGGDYVHVVKQNEKGANYAISHFKVIDCFAQK----FCWLEMQPHTGRTHQLRVHALHMG 263 V ++K A+ AI+H++ I+ + + L+ TGRTHQ+RVH H G Sbjct: 209 SNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHLETGRTHQIRVHMAHKG 268 Query: 264 CPIVGDHKYCANFK-------GNFTSPIQN--KLYLHARYMDLPHPEGGR-LQITAPLPA 313 P++GD Y FK N S I + + LHA + HP + + P+P Sbjct: 269 NPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSLSFSHPRNNQDMDFQVPIPE 328 Query: 314 HMVKTWDSLGFK 325 M+ L K Sbjct: 329 DMLTVIRKLNEK 340 >gi|254780419|ref|YP_003064832.1| aspartyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 622 Score = 30.0 bits (66), Expect = 0.065, Method: Compositional matrix adjust. Identities = 33/135 (24%), Positives = 50/135 (37%), Gaps = 32/135 (23%) Query: 116 GISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTH---RLDQETSGILVVARTRAAAQHL-- 170 I +GG G D + W S+GQ P L + RLD+ + VA A+HL Sbjct: 328 AIPAKGGGGNRAFCDR-MNEWARSQGQ-PGLAYIFWRLDESGN----VAGMGPVAKHLNI 381 Query: 171 --TESFRMRRIQKIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAIS 228 TE+ R+R + + C I GD + N+ Sbjct: 382 VNTEAIRVRLDMQ-----------DGDSCF--------FIAGDPLKFCSFAADARNHIAQ 422 Query: 229 HFKVIDCFAQKFCWL 243 +I+C +FCW+ Sbjct: 423 ELGIINCNCFEFCWI 437 >gi|255764496|ref|YP_003065012.2| excinuclease ABC subunit C [Candidatus Liberibacter asiaticus str. psy62] Length = 616 Score = 24.3 bits (51), Expect = 3.3, Method: Compositional matrix adjust. Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Query: 124 GIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQ 180 G AY++ +KS++ S R+TH + Q + V T A L E+ ++R++ Sbjct: 26 GKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL-LLEANMIKRLK 81 >gi|254780330|ref|YP_003064743.1| 30S ribosomal protein S18 [Candidatus Liberibacter asiaticus str. psy62] Length = 83 Score = 23.9 bits (50), Expect = 4.3, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Query: 44 GQVRVDKKRVKFNNRIQSGQVVRIPPVINALNHIIKEQKILDSSVNLTKH 93 G R+D K ++ NR S + +P I++++H K+Q+ L ++ ++ Sbjct: 27 GAPRIDYKDIRLLNRFLSQRGKIVPSRISSVSH--KKQRELAKAIKRARY 74 >gi|254780466|ref|YP_003064879.1| putative modification methylase [Candidatus Liberibacter asiaticus str. psy62] Length = 375 Score = 23.5 bits (49), Expect = 5.6, Method: Compositional matrix adjust. Identities = 9/24 (37%), Positives = 14/24 (58%) Query: 173 SFRMRRIQKIYWSLVWGIPKNKKE 196 +FR RR Q + +L+W P K + Sbjct: 139 NFRGRRFQNAHETLIWASPSPKAK 162 >gi|254780371|ref|YP_003064784.1| diaminopimelate decarboxylase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 431 Score = 23.5 bits (49), Expect = 6.1, Method: Compositional matrix adjust. Identities = 10/14 (71%), Positives = 10/14 (71%) Query: 117 ISVQGGSGIAYHID 130 I V GG GIAYH D Sbjct: 234 IDVGGGLGIAYHSD 247 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.323 0.138 0.430 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 239,462 Number of Sequences: 1233 Number of extensions: 10496 Number of successful extensions: 22 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 9 length of query: 346 length of database: 328,796 effective HSP length: 75 effective length of query: 271 effective length of database: 236,321 effective search space: 64042991 effective search space used: 64042991 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 39 (19.6 bits)