HHsearch alignment for GI: 254780610 and conserved domain: COG0130
>COG0130 TruB Pseudouridine synthase [Translation, ribosomal structure and biogenesis].
Probab=96.57 E-value=0.0043 Score=38.23 Aligned_cols=69 Identities=29% Similarity=0.377 Sum_probs=47.6
Q ss_pred EEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCC
Q ss_conf 27899624011104567875421002222221024433444436432444433232405721203578888999997211
Q gi|254780610|r 98 DIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGK 177 (340)
Q Consensus 98 ~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~~ 177 (340)
T Consensus 16 Gil~ldKP~G~tS~~--------~v~~vkkil~--------~~K~GH~GTLDP~atGvLpi~ig-~a-TKl~~~l~~--- 74 (271)
T COG0130 16 GVINLDKPPGPTSHE--------VVAWVKRILG--------VEKAGHGGTLDPLATGVLPICLG-EA-TKLVQYLLD--- 74 (271)
T ss_pred CEEEEECCCCCCHHH--------HHHHHHHHHC--------CCCCCCCCCCCCCCCCEEEEEEC-HH-HHHHHHHHH---
T ss_conf 469840799997799--------9999999858--------64056463448743441888834-14-748988720---
Q ss_pred CCCEEEEEEEEEE
Q ss_conf 3221334454320
Q gi|254780610|r 178 STRLKRAYYAMVW 190 (340)
Q Consensus 178 ~~~v~K~Y~Aiv~ 190 (340)
T Consensus 75 ---~~K~Y~a~~~ 84 (271)
T COG0130 75 ---ADKEYVATVR 84 (271)
T ss_pred ---CCCEEEEEEE
T ss_conf ---8947999999