HHsearch alignment for GI: 254780610 and conserved domain: COG1187
>COG1187 RsuA 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].
Probab=99.94 E-value=1.8e-25 Score=171.56 Aligned_cols=210 Identities=25% Similarity=0.304 Sum_probs=140.9
Q ss_pred CCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCC-EEEEEECCCHHCCHHHHHHHHHHCC-CCCEE
Q ss_conf 875789999871768898999999985990499899328675804898-8999705601111023322222101-44027
Q gi|254780610|r 22 EGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGD-SFLITVPAAQKLNIAQENIPLDILY-EDDDI 99 (340)
Q Consensus 22 g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd-~I~i~~~~~~~~~~~~~~~~~~Ily-ED~~l 99 (340)
T Consensus 2 ~~RL~K~La~~G--~~SRr~ae~lI~~G~V~VnG~v~~~~~~~v~~~~~~i~v~g~~--------------~~~~~~~~y 65 (248)
T COG1187 2 SMRLNKFLAEAG--VGSRREAEKLIEEGRVTVNGKVATLGGVVVDPDDDVVEVDGKR--------------IELKEERVY 65 (248)
T ss_pred CCCHHHHHHHCC--CCCHHHHHHHHHCCCEEECCEEECCCCEEECCCCCEEEECCEE--------------EECCCCCEE
T ss_conf 520689998747--7788999999973987889999224776727987689989988--------------112666469
Q ss_pred EEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCC
Q ss_conf 89962401110456787542100222222102443344443643244443323240572120357888899999721132
Q gi|254780610|r 100 IVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKST 179 (340)
Q Consensus 100 lvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~~~~ 179 (340)
T Consensus 66 ~llnKP~G~v~s~~D~~gr~tv~D~lp~~-------~~~~~~~~pvGRLD~dTeGLLLLTnDG~la~r----L~--~P~~ 132 (248)
T COG1187 66 LLLNKPRGYVSSTEDDEGRPTVFDLLPER-------LPRKKRLFPVGRLDKDTEGLLLLTNDGELAHR----LM--HPSS 132 (248)
T ss_pred EEEECCCCEEECCCCCCCCCEEEEECCCC-------CCCCCCEEECCCCCCCCEEEEEEECCHHHHHH----HC--CCCC
T ss_conf 99989987692666889981600025543-------46666333426657777127999578789887----52--8888
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCEEEEEECHHHHHH
Q ss_conf 21334454320243323321100134344433221234445555530000122210112566775001234431158999
Q gi|254780610|r 180 RLKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHLETGRTHQ 259 (340)
Q Consensus 180 ~v~K~Y~Aiv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~~~~~~~~slv~~~~~TGRtHQ 259 (340)
T Consensus 133 ~~~K~Y~v~v~g~~~~~~--l~~---------l~~Gv~l-~d~~~~~~~~~--~l~~---~~~~~~s~~~itl~EGrnrQ 195 (248)
T COG1187 133 EVEKEYLVRVEGPVTEED--LEK---------LRKGVTL-DDGETKPAKPA--SLEK---EPGKNNSWLRITLTEGRNRQ 195 (248)
T ss_pred CCCEEEEEEEECCCCHHH--HHH---------HHCCCEE-CCCCCCCCEEE--EEEE---CCCCCCEEEEEEEECCCCHH
T ss_conf 997799999925899899--999---------8578386-67356601047--8983---17887469999995784789
Q ss_pred HHHHHHHHCCEEECCCCC
Q ss_conf 999998709786041544
Q gi|254780610|r 260 IRVHMAHKGNPLIGDPLY 277 (340)
Q Consensus 260 IRvhla~lG~PIvGD~~Y 277 (340)
T Consensus 196 VRRm~~a~G~~V~~L~R~ 213 (248)
T COG1187 196 VRRMFEAVGLEVLRLKRI 213 (248)
T ss_pred HHHHHHHCCCEEEEEEEE
T ss_conf 999999849967489999