HHsearch alignment for GI: 254780610 and conserved domain: PRK01528

>PRK01528 truB tRNA pseudouridine synthase B; Provisional.
Probab=96.93  E-value=0.0018  Score=40.42  Aligned_cols=70  Identities=23%  Similarity=0.310  Sum_probs=49.1

Q ss_pred             CEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf             02789962401110456787542100222222102443344443643244443323240572120357888899999721
Q gi|254780610|r   97 DDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHG  176 (340)
Q Consensus        97 ~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~  176 (340)
T Consensus         3 ng~l~i~KP~g~TS~--------~vv~~vkk~~~~--------~KvGH~GTLDP~AtGvL~i~~g~a--TK~~~~~~---   61 (293)
T PRK01528          3 NYWLNIYKPRGISSA--------KLVSIVKKILGK--------VKIGHAGTLDVEAEGILPLAVGEA--TKLIQLLI---   61 (293)
T ss_pred             CEEEEEECCCCCCHH--------HHHHHHHHHHCC--------CCCCCCCCCCCCCCCEEEEEECHH--HHHHHHHC---
T ss_conf             758998779999989--------999999998489--------805768678875701589997866--50337865---


Q ss_pred             CCCCEEEEEEEEEE
Q ss_conf             13221334454320
Q gi|254780610|r  177 KSTRLKRAYYAMVW  190 (340)
Q Consensus       177 ~~~~v~K~Y~Aiv~  190 (340)
T Consensus        62 ---~~~K~Y~~~~~   72 (293)
T PRK01528         62 ---DAKKTYIFTVK   72 (293)
T ss_pred             ---CCCEEEEEEEE
T ss_conf             ---79806999999