HHsearch alignment for GI: 254780610 and conserved domain: PRK01528
>PRK01528 truB tRNA pseudouridine synthase B; Provisional.
Probab=96.93 E-value=0.0018 Score=40.42 Aligned_cols=70 Identities=23% Similarity=0.310 Sum_probs=49.1
Q ss_pred CEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 02789962401110456787542100222222102443344443643244443323240572120357888899999721
Q gi|254780610|r 97 DDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHG 176 (340)
Q Consensus 97 ~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~ 176 (340)
T Consensus 3 ng~l~i~KP~g~TS~--------~vv~~vkk~~~~--------~KvGH~GTLDP~AtGvL~i~~g~a--TK~~~~~~--- 61 (293)
T PRK01528 3 NYWLNIYKPRGISSA--------KLVSIVKKILGK--------VKIGHAGTLDVEAEGILPLAVGEA--TKLIQLLI--- 61 (293)
T ss_pred CEEEEEECCCCCCHH--------HHHHHHHHHHCC--------CCCCCCCCCCCCCCCEEEEEECHH--HHHHHHHC---
T ss_conf 758998779999989--------999999998489--------805768678875701589997866--50337865---
Q ss_pred CCCCEEEEEEEEEE
Q ss_conf 13221334454320
Q gi|254780610|r 177 KSTRLKRAYYAMVW 190 (340)
Q Consensus 177 ~~~~v~K~Y~Aiv~ 190 (340)
T Consensus 62 ---~~~K~Y~~~~~ 72 (293)
T PRK01528 62 ---DAKKTYIFTVK 72 (293)
T ss_pred ---CCCEEEEEEEE
T ss_conf ---79806999999