HHsearch alignment for GI: 254780610 and conserved domain: PRK01550
>PRK01550 truB tRNA pseudouridine synthase B; Provisional.
Probab=96.77 E-value=0.0018 Score=40.52 Aligned_cols=70 Identities=26% Similarity=0.399 Sum_probs=48.7
Q ss_pred CEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 02789962401110456787542100222222102443344443643244443323240572120357888899999721
Q gi|254780610|r 97 DDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHG 176 (340)
Q Consensus 97 ~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~ 176 (340)
T Consensus 2 ~Gil~idKP~G~TS~--------~vv~~vr~~l~~--------kKvGH~GTLDP~AtGvL~i~iG~a--TKl~~~l~~-- 61 (307)
T PRK01550 2 EGVVLLHKPKGMTSH--------DCVFKLRKILRE--------KRIGHTGTLDPDVTGVLPICVGRA--TKIAQFLTS-- 61 (307)
T ss_pred CEEEEECCCCCCCHH--------HHHHHHHHHHCC--------CCCCCCCCCCCCCEEEEEEEECCC--HHHCHHHCC--
T ss_conf 779997069989989--------999999998489--------834647467986621699997800--001344466--
Q ss_pred CCCCEEEEEEEEEE
Q ss_conf 13221334454320
Q gi|254780610|r 177 KSTRLKRAYYAMVW 190 (340)
Q Consensus 177 ~~~~v~K~Y~Aiv~ 190 (340)
T Consensus 62 ----~~K~Y~a~~~ 71 (307)
T PRK01550 62 ----ETKTYEGEVT 71 (307)
T ss_pred ----CCCEEEEEEE
T ss_conf ----7834899999