HHsearch alignment for GI: 254780610 and conserved domain: PRK02484
>PRK02484 truB tRNA pseudouridine synthase B; Provisional.
Probab=97.09 E-value=0.00083 Score=42.48 Aligned_cols=70 Identities=27% Similarity=0.338 Sum_probs=48.9
Q ss_pred CEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 02789962401110456787542100222222102443344443643244443323240572120357888899999721
Q gi|254780610|r 97 DDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHG 176 (340)
Q Consensus 97 ~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~ 176 (340)
T Consensus 3 ~G~l~vdKP~G~TS~--------~vv~~ikk~~~~--------kKvGH~GTLDP~AtGvL~v~~G~a--Tkl~~~~~~-- 62 (293)
T PRK02484 3 NGIINLKKEAGMTSH--------DAVFKLRKILQT--------KKIGHGGTLDPDVVGVLPIAVGKA--TRVIEYMTE-- 62 (293)
T ss_pred CEEEEEECCCCCCHH--------HHHHHHHHHHCC--------CCCCCCCCCCCCCEEEEEEEECHH--HHHHHHHCC--
T ss_conf 669997269999989--------999999998489--------855658367986612689997887--715187664--
Q ss_pred CCCCEEEEEEEEEE
Q ss_conf 13221334454320
Q gi|254780610|r 177 KSTRLKRAYYAMVW 190 (340)
Q Consensus 177 ~~~~v~K~Y~Aiv~ 190 (340)
T Consensus 63 ----~~K~Y~~~~~ 72 (293)
T PRK02484 63 ----AGKVYEGEVT 72 (293)
T ss_pred ----CCCEEEEEEE
T ss_conf ----8938999999