HHsearch alignment for GI: 254780610 and conserved domain: PRK02484

>PRK02484 truB tRNA pseudouridine synthase B; Provisional.
Probab=97.09  E-value=0.00083  Score=42.48  Aligned_cols=70  Identities=27%  Similarity=0.338  Sum_probs=48.9

Q ss_pred             CEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf             02789962401110456787542100222222102443344443643244443323240572120357888899999721
Q gi|254780610|r   97 DDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHG  176 (340)
Q Consensus        97 ~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~  176 (340)
T Consensus         3 ~G~l~vdKP~G~TS~--------~vv~~ikk~~~~--------kKvGH~GTLDP~AtGvL~v~~G~a--Tkl~~~~~~--   62 (293)
T PRK02484          3 NGIINLKKEAGMTSH--------DAVFKLRKILQT--------KKIGHGGTLDPDVVGVLPIAVGKA--TRVIEYMTE--   62 (293)
T ss_pred             CEEEEEECCCCCCHH--------HHHHHHHHHHCC--------CCCCCCCCCCCCCEEEEEEEECHH--HHHHHHHCC--
T ss_conf             669997269999989--------999999998489--------855658367986612689997887--715187664--


Q ss_pred             CCCCEEEEEEEEEE
Q ss_conf             13221334454320
Q gi|254780610|r  177 KSTRLKRAYYAMVW  190 (340)
Q Consensus       177 ~~~~v~K~Y~Aiv~  190 (340)
T Consensus        63 ----~~K~Y~~~~~   72 (293)
T PRK02484         63 ----AGKVYEGEVT   72 (293)
T ss_pred             ----CCCEEEEEEE
T ss_conf             ----8938999999