HHsearch alignment for GI: 254780610 and conserved domain: PRK02755

>PRK02755 truB tRNA pseudouridine synthase B; Provisional.
Probab=96.02  E-value=0.0086  Score=36.41  Aligned_cols=69  Identities=32%  Similarity=0.374  Sum_probs=46.6

Q ss_pred             CEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf             02789962401110456787542100222222102443344443643244443323240572120357888899999721
Q gi|254780610|r   97 DDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHG  176 (340)
Q Consensus        97 ~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~  176 (340)
T Consensus         2 ~G~l~i~Kp~G~tS~--------~vv~~~k~~~~~--------kKvGH~GTLDP~AtGvL~i~~G~aT--k~~~~l----   59 (291)
T PRK02755          2 QGFLNLNKPAGWTSH--------DCVAKLRRLLRL--------KRVGHGGTLDPAATGVLPIAVGKAT--RLLPYL----   59 (291)
T ss_pred             CEEEEEECCCCCCHH--------HHHHHHHHHHCC--------CCCCCCCCCCCCCCCEEEEEECHHH--EECCCC----
T ss_conf             769998359989989--------999999998588--------8367785779755052899976576--643004----


Q ss_pred             CCCCEEEEEEEEEE
Q ss_conf             13221334454320
Q gi|254780610|r  177 KSTRLKRAYYAMVW  190 (340)
Q Consensus       177 ~~~~v~K~Y~Aiv~  190 (340)
T Consensus        60 ~--~-~K~Y~~~~~   70 (291)
T PRK02755         60 P--S-GKAYKATVR   70 (291)
T ss_pred             C--C-CCEEEEEEE
T ss_conf             8--9-958999999