HHsearch alignment for GI: 254780610 and conserved domain: PRK04099

>PRK04099 truB tRNA pseudouridine synthase B; Provisional.
Probab=97.11  E-value=0.00069  Score=42.94  Aligned_cols=70  Identities=29%  Similarity=0.469  Sum_probs=49.0

Q ss_pred             CEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf             02789962401110456787542100222222102443344443643244443323240572120357888899999721
Q gi|254780610|r   97 DDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHG  176 (340)
Q Consensus        97 ~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~  176 (340)
T Consensus         2 ngil~i~KP~G~TS~--------~vv~~vkk~l~~--------kKvGH~GTLDP~AtGvLiv~~G~a--TKl~~~l~---   60 (272)
T PRK04099          2 NRLFVANKPPGLSSN--------AFLSRLKRKYGV--------KKAGFSGTLDPFAKGVLIVAFGQY--TKLFRFLD---   60 (272)
T ss_pred             CEEEEEECCCCCCHH--------HHHHHHHHHHCC--------CCCCCCCCCCCCCCCEEEEEECHH--HHHHHHHC---
T ss_conf             739996189989989--------999999998499--------844637056986604599998877--63117667---


Q ss_pred             CCCCEEEEEEEEEE
Q ss_conf             13221334454320
Q gi|254780610|r  177 KSTRLKRAYYAMVW  190 (340)
Q Consensus       177 ~~~~v~K~Y~Aiv~  190 (340)
T Consensus        61 ---~~~K~Y~a~i~   71 (272)
T PRK04099         61 ---KTPKTYKATLW   71 (272)
T ss_pred             ---CCCCEEEEEEE
T ss_conf             ---78827999999