HHsearch alignment for GI: 254780610 and conserved domain: PRK04270
>PRK04270 H/ACA RNA-protein complex component Cbf5p; Reviewed.
Probab=96.67 E-value=0.0025 Score=39.57 Aligned_cols=73 Identities=21% Similarity=0.331 Sum_probs=50.4
Q ss_pred CCCCEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHH
Q ss_conf 14402789962401110456787542100222222102443344443643244443323240572120357888899999
Q gi|254780610|r 94 YEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFV 173 (340)
Q Consensus 94 yED~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~ 173 (340)
T Consensus 19 ~~~~Gil~idKP~G~TS~--------~vv~~vrk~l~~--------kKvGH~GTLDP~AtGvL~i~~G~a--TK~~~~l~ 80 (300)
T PRK04270 19 YINYGVVNLDKPPGPTSH--------EVAAWVRDILGV--------EKAGHGGTLDPKVTGVLPVALGKA--TKVVQALL 80 (300)
T ss_pred HHHCCEEEEECCCCCCHH--------HHHHHHHHHHCC--------CCCCCCCCCCCCCCCEEEEEECHH--HHHHHHHC
T ss_conf 972999999689899989--------999999998588--------846878678974623378886798--88869867
Q ss_pred HHCCCCCEEEEEEEEEE
Q ss_conf 72113221334454320
Q gi|254780610|r 174 DHGKSTRLKRAYYAMVW 190 (340)
Q Consensus 174 ~~~~~~~v~K~Y~Aiv~ 190 (340)
T Consensus 81 ~------~~K~Y~~~~~ 91 (300)
T PRK04270 81 E------SPKEYVCVMH 91 (300)
T ss_pred C------CCCEEEEEEE
T ss_conf 5------8945877101