HHsearch alignment for GI: 254780610 and conserved domain: PRK04642
>PRK04642 truB tRNA pseudouridine synthase B; Provisional.
Probab=96.85 E-value=0.0018 Score=40.42 Aligned_cols=70 Identities=23% Similarity=0.348 Sum_probs=48.7
Q ss_pred CEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 02789962401110456787542100222222102443344443643244443323240572120357888899999721
Q gi|254780610|r 97 DDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHG 176 (340)
Q Consensus 97 ~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~ 176 (340)
T Consensus 10 ~Gil~idKP~g~TS~--------~vv~~vrr~l~~--------~KvGH~GTLDP~AtGvL~i~~g~a--TK~~~~~~~-- 69 (300)
T PRK04642 10 HGILLLDKPAGLSSN--------NALQAARRLLRA--------EKGGHTGSLDPLATGLLPLCFGEA--TKIAGLLLG-- 69 (300)
T ss_pred CEEEEEECCCCCCHH--------HHHHHHHHHHCC--------CCCCCCCCCCCCCCCEEEEEECHH--HHHCHHHCC--
T ss_conf 779997079989989--------999999998689--------845768577985604378997876--513666561--
Q ss_pred CCCCEEEEEEEEEE
Q ss_conf 13221334454320
Q gi|254780610|r 177 KSTRLKRAYYAMVW 190 (340)
Q Consensus 177 ~~~~v~K~Y~Aiv~ 190 (340)
T Consensus 70 ----~~K~Y~~~~~ 79 (300)
T PRK04642 70 ----SAKAYDAEIV 79 (300)
T ss_pred ----CCCEEEEEEE
T ss_conf ----3664379999