HHsearch alignment for GI: 254780610 and conserved domain: PRK10158

>PRK10158 23S rRNA/tRNA pseudouridine synthase A; Provisional.
Probab=100.00  E-value=0  Score=415.08  Aligned_cols=210  Identities=34%  Similarity=0.533  Sum_probs=171.3

Q ss_pred             HHHHHHHHHCCCCCEEEEEECCCHHHCCCCCCCC-CCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCH
Q ss_conf             2332222210144027899624011104567875-421002222221024433444436432444433232405721203
Q gi|254780610|r   84 AQENIPLDILYEDDDIIVINKPAGLVVHPAPGNW-TGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKND  162 (340)
Q Consensus        84 ~~~~~~~~IlyED~~llvinKPaGl~vhp~~~~~-~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~  162 (340)
T Consensus         8 pp~~~~l~IlyED~~llvvnKP~gl~~~pg~~~~~~~~~~~~~----~~~------~~~~~~vHRLDr~TSGlll~AK~~   77 (219)
T PRK10158          8 PPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRI----QRD------YPQAESVHRLDMATSGVIVVALTK   77 (219)
T ss_pred             CCCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCCHHHHHHH----HHC------CCCCCCCCCCCCCCCCEEEEECCH
T ss_conf             8899995689979999999999998207997645620699987----740------786663477899975369997899


Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCC
Q ss_conf             57888899999721132213344543202433233211001343444332212344455555300001222101125667
Q gi|254780610|r  163 LAHQKLSEQFVDHGKSTRLKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSN  242 (340)
Q Consensus       163 ~a~~~l~~~f~~~~~~~~v~K~Y~Aiv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~~~~~  242 (340)
T Consensus        78 ~a~~~l~~~f~----~r~v~K~YlA~v~G~~~~~~g~i~~~l~~~~~~~~~~~~---~~~~gk~a~t~~~~l~~~----~  146 (219)
T PRK10158         78 AAERELKRQFR----EREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKV---CYETGKPAQTEYEVVEYA----A  146 (219)
T ss_pred             HHHHHHHHHHH----HCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCCCEEE---ECCCCCCCCEEEEEEEEC----C
T ss_conf             99999988787----374673799998368664356112452504777761699---724674121589999973----8


Q ss_pred             CCCCEEEEEECHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHCEEEEECCCCCCEEEE
Q ss_conf             75001234431158999999998709786041544775544433457013554407980443210004246889768999
Q gi|254780610|r  243 FAVSLLKCHLETGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSLSFSHPRNNQDMDF  322 (340)
Q Consensus       243 ~~~slv~~~~~TGRtHQIRvhla~lG~PIvGD~~YG~~~~~~~~~~~~~~~~~~~~~~r~~LHA~~l~f~hP~t~~~~~f  322 (340)
T Consensus       147 ~~~~lv~l~p~TGRtHQIRvhla~lG~PIvGD~~Yg~~~~~~-------------~~~rl~LHA~~L~f~HP~t~~~~~~  213 (219)
T PRK10158        147 DNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARA-------------MAPRLLLHAEMLTITHPAYGNSMTF  213 (219)
T ss_pred             CCEEEEEEEECCCCHHHHHHHHHHCCCCEECCCCCCCCCCCC-------------CCCCHHHHCCEEEEECCCCCCEEEE
T ss_conf             985999998666851899999998799274787778843246-------------7758304108758588299998999


Q ss_pred             ECCCC
Q ss_conf             84997
Q gi|254780610|r  323 QVPIP  327 (340)
Q Consensus       323 ~aplP  327 (340)
T Consensus       214 ~aP~~  218 (219)
T PRK10158        214 KAPAD  218 (219)
T ss_pred             ECCCC
T ss_conf             67999