HHsearch alignment for GI: 254780610 and conserved domain: PRK10158
>PRK10158 23S rRNA/tRNA pseudouridine synthase A; Provisional.
Probab=100.00 E-value=0 Score=415.08 Aligned_cols=210 Identities=34% Similarity=0.533 Sum_probs=171.3
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCHHHCCCCCCCC-CCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCH
Q ss_conf 2332222210144027899624011104567875-421002222221024433444436432444433232405721203
Q gi|254780610|r 84 AQENIPLDILYEDDDIIVINKPAGLVVHPAPGNW-TGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKND 162 (340)
Q Consensus 84 ~~~~~~~~IlyED~~llvinKPaGl~vhp~~~~~-~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~ 162 (340)
T Consensus 8 pp~~~~l~IlyED~~llvvnKP~gl~~~pg~~~~~~~~~~~~~----~~~------~~~~~~vHRLDr~TSGlll~AK~~ 77 (219)
T PRK10158 8 PPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRI----QRD------YPQAESVHRLDMATSGVIVVALTK 77 (219)
T ss_pred CCCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCCHHHHHHH----HHC------CCCCCCCCCCCCCCCCEEEEECCH
T ss_conf 8899995689979999999999998207997645620699987----740------786663477899975369997899
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCC
Q ss_conf 57888899999721132213344543202433233211001343444332212344455555300001222101125667
Q gi|254780610|r 163 LAHQKLSEQFVDHGKSTRLKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSN 242 (340)
Q Consensus 163 ~a~~~l~~~f~~~~~~~~v~K~Y~Aiv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~~~~~ 242 (340)
T Consensus 78 ~a~~~l~~~f~----~r~v~K~YlA~v~G~~~~~~g~i~~~l~~~~~~~~~~~~---~~~~gk~a~t~~~~l~~~----~ 146 (219)
T PRK10158 78 AAERELKRQFR----EREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKV---CYETGKPAQTEYEVVEYA----A 146 (219)
T ss_pred HHHHHHHHHHH----HCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCCCEEE---ECCCCCCCCEEEEEEEEC----C
T ss_conf 99999988787----374673799998368664356112452504777761699---724674121589999973----8
Q ss_pred CCCCEEEEEECHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHCEEEEECCCCCCEEEE
Q ss_conf 75001234431158999999998709786041544775544433457013554407980443210004246889768999
Q gi|254780610|r 243 FAVSLLKCHLETGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSLSFSHPRNNQDMDF 322 (340)
Q Consensus 243 ~~~slv~~~~~TGRtHQIRvhla~lG~PIvGD~~YG~~~~~~~~~~~~~~~~~~~~~~r~~LHA~~l~f~hP~t~~~~~f 322 (340)
T Consensus 147 ~~~~lv~l~p~TGRtHQIRvhla~lG~PIvGD~~Yg~~~~~~-------------~~~rl~LHA~~L~f~HP~t~~~~~~ 213 (219)
T PRK10158 147 DNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARA-------------MAPRLLLHAEMLTITHPAYGNSMTF 213 (219)
T ss_pred CCEEEEEEEECCCCHHHHHHHHHHCCCCEECCCCCCCCCCCC-------------CCCCHHHHCCEEEEECCCCCCEEEE
T ss_conf 985999998666851899999998799274787778843246-------------7758304108758588299998999
Q ss_pred ECCCC
Q ss_conf 84997
Q gi|254780610|r 323 QVPIP 327 (340)
Q Consensus 323 ~aplP 327 (340)
T Consensus 214 ~aP~~ 218 (219)
T PRK10158 214 KAPAD 218 (219)
T ss_pred ECCCC
T ss_conf 67999