HHsearch alignment for GI: 254780610 and conserved domain: PRK10475
>PRK10475 23S rRNA pseudouridine synthase F; Provisional.
Probab=99.93 E-value=5.8e-25 Score=168.54 Aligned_cols=202 Identities=21% Similarity=0.244 Sum_probs=136.2
Q ss_pred HHCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEEECCCHHCCHHHHHHHHHHCCCCCE
Q ss_conf 13687578999987176889899999998599049989932867580489889997056011110233222221014402
Q gi|254780610|r 19 STAEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITVPAAQKLNIAQENIPLDILYEDDD 98 (340)
Q Consensus 19 ~~~g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~~~~~~~~~~~~~~~~~~IlyED~~ 98 (340)
T Consensus 3 ~~~~~RL~K~LA~~--G~~SRReAe~lI~~GrV~VNGk~v~-~g~~V~~~D~V~vdg~~i~~~~-----------~~~~~ 68 (290)
T PRK10475 3 PDSSTRLNKYISES--GICSRREADRYIEQGNVFINGKRAT-IGDQVKPGDVVKVNGQLIEPRE-----------AEDLV 68 (290)
T ss_pred CCCCCHHHHHHHHC--CCCHHHHHHHHHHCCCEEECCEECC-CCCCCCCCCEEEECCEECCCCC-----------CCCEE
T ss_conf 98861499999877--7835999999998597898999957-9888699998999998912336-----------67639
Q ss_pred EEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 78996240111045678754210022222210244334444364324444332324057212035788889999972113
Q gi|254780610|r 99 IIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKS 178 (340)
Q Consensus 99 llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~~~ 178 (340)
T Consensus 69 yi~lnKP~G~v~t~~d-~~r~ti~d~l~-----------~~~rl~pVGRLD~dSeGLLlLTNDG~l~~~l~------hP~ 130 (290)
T PRK10475 69 LIALNKPVGIVSTTED-GERDNIVDFVN-----------HSKRVFPIGRLDKDSQGLIFLTNHGDLVNKIL------RAG 130 (290)
T ss_pred EEEEECCCCCCCCCCC-CCCCCEEECCC-----------CCCCEEECCCCCCCCCCEEEECCCHHHHHHHH------CCC
T ss_conf 9999589870677766-78986464147-----------75635050466877767599859879999873------576
Q ss_pred CCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCEEEEEECHHHHH
Q ss_conf 22133445432024332332110013434443322123444555553000012221011256677500123443115899
Q gi|254780610|r 179 TRLKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHLETGRTH 258 (340)
Q Consensus 179 ~~v~K~Y~Aiv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~~~~~~~~slv~~~~~TGRtH 258 (340)
T Consensus 131 ~~i~K~Y~V~v~g~i~~~~--l~~-l~--------~Gv~i-~g~~~~~~~--v~~~------~---~~~~~i~L~EGknR 187 (290)
T PRK10475 131 NDHEKEYLVTVDKPITDEF--IRG-MG--------AGVPI-LGTVTKKCK--VKKE------A---PFVFRITLVQGLNR 187 (290)
T ss_pred CCCCEEEEEEECCCCCHHH--HHH-HH--------CCCEE-CCEECCEEE--EEEC------C---CCEEEEEEECCCCH
T ss_conf 7895599999898589999--999-85--------89656-888601149--9964------8---97899999868049
Q ss_pred HHHHHHHHHCCEEECCC
Q ss_conf 99999987097860415
Q gi|254780610|r 259 QIRVHMAHKGNPLIGDP 275 (340)
Q Consensus 259 QIRvhla~lG~PIvGD~ 275 (340)
T Consensus 188 qIRRm~~~~g~~V~~L~ 204 (290)
T PRK10475 188 QIRRMCEHFGYEVTKLE 204 (290)
T ss_pred HHHHHHHHCCCEEEEEE
T ss_conf 99999998599781789