HHsearch alignment for GI: 254780610 and conserved domain: PRK11025

>PRK11025 23S rRNA pseudouridylate synthase C; Provisional.
Probab=100.00  E-value=0  Score=570.92  Aligned_cols=304  Identities=31%  Similarity=0.447  Sum_probs=252.1

Q ss_pred             HCCCEEEEEECHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEEECCCH---HCCH
Q ss_conf             0162499995711368757899998717688989999999859904998993286758048988999705601---1110
Q gi|254780610|r    7 NCSSIKISLLSDSTAEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITVPAAQ---KLNI   83 (340)
Q Consensus         7 ~~~~~~~~~V~~~~~g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~~~~~~---~~~~   83 (340)
T Consensus         4 ~~~~v~~i~V~~~~~G~RLD~fL~~~l~-~~srs~i~klir~g~V~VNg~~v-k~~~~l~~GD~I~i~~~~~~~~~~~p~   81 (317)
T PRK11025          4 ETPSVKIVAISADEAGQRIDNFLRTQLK-GVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIPPVRVAEREEEAV   81 (317)
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHCC-CCCHHHHHHHHHCCCEEECCEEC-CCCCCCCCCCEEEECCCCCCCCCCCCC
T ss_conf             8996279998930079759999997566-26999999999869989999995-710465799999988866564445778


Q ss_pred             HH-----HHHHHHHCCCCCEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             23-----3222221014402789962401110456787542100222222102443344443643244443323240572
Q gi|254780610|r   84 AQ-----ENIPLDILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVV  158 (340)
Q Consensus        84 ~~-----~~~~~~IlyED~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~  158 (340)
T Consensus        82 ~~~~~~~~~l~~~IlyED~~llvvnKPaGl~vhp~~~~~~~-~~~~l~~~~~-------~~~~~~iVHRLDr~TSGllv~  153 (317)
T PRK11025         82 SPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG-VIEGLRALRP-------EARFLELVHRLDRDTSGVLLV  153 (317)
T ss_pred             CCCCCCCCCCCCEEEEECCCEEEEECCCCCEECCCCCCHHH-HHHHHHHHCC-------CCCCCCCEECCCCCCCEEEEE
T ss_conf             85511002455607994798899977435622688873168-9999997588-------887678131269987426887


Q ss_pred             ECCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEC
Q ss_conf             12035788889999972113221334454320243323321100134344433221234445555530000122210112
Q gi|254780610|r  159 AKNDLAHQKLSEQFVDHGKSTRLKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYN  238 (340)
Q Consensus       159 Ak~~~a~~~l~~~f~~~~~~~~v~K~Y~Aiv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~  238 (340)
T Consensus       154 AK~~~a~~~l~~~f~----~r~v~K~Y~Alv~G~~~~~~~~i~~pl~~~~~~~~~~~~~--~~~~gk~a~T~~~v~~~~~  227 (317)
T PRK11025        154 AKKRSALRSLHEQLR----EKGMQKDYLALVRGQWQSHVKVVQAPLLKNILQSGERIVR--VSQEGKPSETRFKVEERYA  227 (317)
T ss_pred             ECCHHHHHHHHHHHH----HCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCEEEE--CCCCCCCCHHHHHHHHHCC
T ss_conf             168999999999997----3725755999982763677887961000466767645662--2777776410144676527


Q ss_pred             CCCCCCCCEEEEEECHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHCEEEEECCCCCC
Q ss_conf             56677500123443115899999999870978604154477554443345701355440798044321000424688976
Q gi|254780610|r  239 KNSNFAVSLLKCHLETGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSLSFSHPRNNQ  318 (340)
Q Consensus       239 ~~~~~~~slv~~~~~TGRtHQIRvhla~lG~PIvGD~~YG~~~~~~~~~~~~~~~~~~~~~~r~~LHA~~l~f~hP~t~~  318 (340)
T Consensus       228 -----~~sLv~~~~~TGRtHQIRvHla~~G~PI~GD~~YG~~~~~~~--------~~~~~~~R~~LHA~~L~F~HP~t~~  294 (317)
T PRK11025        228 -----FATLVRASPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDQQ--------LTGTGLNRLFLHAAALKFTHPGTGE  294 (317)
T ss_pred             -----CCCCEEEECCCCCHHHHHHHHHHCCCCEECCCCCCCCCCCHH--------HHCCCCCCHHHHCCCCEEECCCCCC
T ss_conf             -----864005755807589999999877996838520287421202--------3036885543521865718889998


Q ss_pred             EEEEECCCCHHHHHHHHHHHC
Q ss_conf             899984997899999998851
Q gi|254780610|r  319 DMDFQVPIPEDMLTVIRKLNE  339 (340)
Q Consensus       319 ~~~f~aplP~~~~~~l~~L~~  339 (340)
T Consensus       295 ~~~f~aplP~d~~~~l~~Lr~  315 (317)
T PRK11025        295 VMRIEAPLDNQLKRCLQKLRN  315 (317)
T ss_pred             EEEEECCCHHHHHHHHHHHHC
T ss_conf             699982684999999999862