HHsearch alignment for GI: 254780610 and conserved domain: PRK11025
>PRK11025 23S rRNA pseudouridylate synthase C; Provisional.
Probab=100.00 E-value=0 Score=570.92 Aligned_cols=304 Identities=31% Similarity=0.447 Sum_probs=252.1
Q ss_pred HCCCEEEEEECHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEEECCCH---HCCH
Q ss_conf 0162499995711368757899998717688989999999859904998993286758048988999705601---1110
Q gi|254780610|r 7 NCSSIKISLLSDSTAEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITVPAAQ---KLNI 83 (340)
Q Consensus 7 ~~~~~~~~~V~~~~~g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~~~~~~---~~~~ 83 (340)
T Consensus 4 ~~~~v~~i~V~~~~~G~RLD~fL~~~l~-~~srs~i~klir~g~V~VNg~~v-k~~~~l~~GD~I~i~~~~~~~~~~~p~ 81 (317)
T PRK11025 4 ETPSVKIVAISADEAGQRIDNFLRTQLK-GVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIPPVRVAEREEEAV 81 (317)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHCC-CCCHHHHHHHHHCCCEEECCEEC-CCCCCCCCCCEEEECCCCCCCCCCCCC
T ss_conf 8996279998930079759999997566-26999999999869989999995-710465799999988866564445778
Q ss_pred HH-----HHHHHHHCCCCCEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 23-----3222221014402789962401110456787542100222222102443344443643244443323240572
Q gi|254780610|r 84 AQ-----ENIPLDILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVV 158 (340)
Q Consensus 84 ~~-----~~~~~~IlyED~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~ 158 (340)
T Consensus 82 ~~~~~~~~~l~~~IlyED~~llvvnKPaGl~vhp~~~~~~~-~~~~l~~~~~-------~~~~~~iVHRLDr~TSGllv~ 153 (317)
T PRK11025 82 SPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG-VIEGLRALRP-------EARFLELVHRLDRDTSGVLLV 153 (317)
T ss_pred CCCCCCCCCCCCEEEEECCCEEEEECCCCCEECCCCCCHHH-HHHHHHHHCC-------CCCCCCCEECCCCCCCEEEEE
T ss_conf 85511002455607994798899977435622688873168-9999997588-------887678131269987426887
Q ss_pred ECCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEC
Q ss_conf 12035788889999972113221334454320243323321100134344433221234445555530000122210112
Q gi|254780610|r 159 AKNDLAHQKLSEQFVDHGKSTRLKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYN 238 (340)
Q Consensus 159 Ak~~~a~~~l~~~f~~~~~~~~v~K~Y~Aiv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~ 238 (340)
T Consensus 154 AK~~~a~~~l~~~f~----~r~v~K~Y~Alv~G~~~~~~~~i~~pl~~~~~~~~~~~~~--~~~~gk~a~T~~~v~~~~~ 227 (317)
T PRK11025 154 AKKRSALRSLHEQLR----EKGMQKDYLALVRGQWQSHVKVVQAPLLKNILQSGERIVR--VSQEGKPSETRFKVEERYA 227 (317)
T ss_pred ECCHHHHHHHHHHHH----HCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCEEEE--CCCCCCCCHHHHHHHHHCC
T ss_conf 168999999999997----3725755999982763677887961000466767645662--2777776410144676527
Q ss_pred CCCCCCCCEEEEEECHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHCEEEEECCCCCC
Q ss_conf 56677500123443115899999999870978604154477554443345701355440798044321000424688976
Q gi|254780610|r 239 KNSNFAVSLLKCHLETGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSLSFSHPRNNQ 318 (340)
Q Consensus 239 ~~~~~~~slv~~~~~TGRtHQIRvhla~lG~PIvGD~~YG~~~~~~~~~~~~~~~~~~~~~~r~~LHA~~l~f~hP~t~~ 318 (340)
T Consensus 228 -----~~sLv~~~~~TGRtHQIRvHla~~G~PI~GD~~YG~~~~~~~--------~~~~~~~R~~LHA~~L~F~HP~t~~ 294 (317)
T PRK11025 228 -----FATLVRASPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDQQ--------LTGTGLNRLFLHAAALKFTHPGTGE 294 (317)
T ss_pred -----CCCCEEEECCCCCHHHHHHHHHHCCCCEECCCCCCCCCCCHH--------HHCCCCCCHHHHCCCCEEECCCCCC
T ss_conf -----864005755807589999999877996838520287421202--------3036885543521865718889998
Q ss_pred EEEEECCCCHHHHHHHHHHHC
Q ss_conf 899984997899999998851
Q gi|254780610|r 319 DMDFQVPIPEDMLTVIRKLNE 339 (340)
Q Consensus 319 ~~~f~aplP~~~~~~l~~L~~ 339 (340)
T Consensus 295 ~~~f~aplP~d~~~~l~~Lr~ 315 (317)
T PRK11025 295 VMRIEAPLDNQLKRCLQKLRN 315 (317)
T ss_pred EEEEECCCHHHHHHHHHHHHC
T ss_conf 699982684999999999862