HHsearch alignment for GI: 254780610 and conserved domain: PRK12565
>PRK12565 30S ribosomal protein S4; Provisional.
Probab=98.00 E-value=9.3e-06 Score=54.10 Aligned_cols=53 Identities=23% Similarity=0.283 Sum_probs=46.4
Q ss_pred CCCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEE
Q ss_conf 687578999987176889899999998599049989932867580489889997
Q gi|254780610|r 21 AEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLIT 74 (340)
Q Consensus 21 ~g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~ 74 (340)
T Consensus 86 LE~RLDnvv~R-~gfa~t~~~ARQlV~Hghi~vng~kVdIPSy~vk~GDvI~vk 138 (197)
T PRK12565 86 LECRLDNVVYR-IGFASSIRQARQMVNHGHILVNGKKVNIPSYEVKVGDEITLR 138 (197)
T ss_pred HHHHHHHHHHH-CCCCCCHHHHHHHHHCCCEEECCEEECCCCEEECCCCEEEEC
T ss_conf 99866677113-441057999866740788897998955887670699999973