HHsearch alignment for GI: 254780610 and conserved domain: TIGR00431

>TIGR00431 TruB tRNA pseudouridine synthase B; InterPro: IPR014780 TruB, the tRNA pseudouridine 55 synthase, converts uracil to pseudouridine in the T loop of most tRNAs of all three domains of life. This model is built on a seed alignment of bacterial proteins only. Saccharomyces cerevisiae protein YNL292w (Pus4) has been shown to be the pseudouridine 55 synthase of both cytosolic and mitochondrial compartments, active at no other position on tRNA and the only enzyme active at that position in the species. A distinct yeast protein YLR175w, (centromere/microtubule-binding protein CBF5) is an rRNA pseudouridine synthase, and the archaeal set is much more similar to CBF5 than to Pus4. It is unclear whether the archaeal proteins found by this model are tRNA pseudouridine 55 synthases like TruB, rRNA pseudouridine synthases like CBF5, or (as suggested by the absence of paralogs in the Archaea) both. CBF5 likely has additional, eukaryotic-specific functions.; GO: 0003723 RNA binding, 0016439 tRNA-pseudouridine synthase activity, 0031119 tRNA pseudouridine synthesis.
Probab=95.25  E-value=0.0079  Score=36.62  Aligned_cols=71  Identities=25%  Similarity=0.364  Sum_probs=49.0

Q ss_pred             CEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf             02789962401110456787542100222222102443344443643244443323240572120357888899999721
Q gi|254780610|r   97 DDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHG  176 (340)
Q Consensus        97 ~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~  176 (340)
T Consensus         2 ~GvLll~Kp~G~TSfd--------~~~~v~rLl~~--------kkvGHtGTLDp~A~G~L~~~vGr~a-Tkl~~yl~~--   62 (236)
T TIGR00431         2 NGVLLLDKPQGMTSFD--------ALAKVRRLLGV--------KKVGHTGTLDPFATGVLPILVGRKA-TKLSPYLTD--   62 (236)
T ss_pred             CCCCCCCCCCCCCHHH--------HHHHHHHHHCC--------CCCCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHCC--
T ss_conf             7204155788878899--------99999998707--------8522066653024103542230013-434333126--


Q ss_pred             CCCCEEEEEEEEEE
Q ss_conf             13221334454320
Q gi|254780610|r  177 KSTRLKRAYYAMVW  190 (340)
Q Consensus       177 ~~~~v~K~Y~Aiv~  190 (340)
T Consensus        63 ----~dK~Y~A~~~   72 (236)
T TIGR00431        63 ----LDKEYEAEIR   72 (236)
T ss_pred             ----CCCEEEEEEE
T ss_conf             ----4761799998