HHsearch alignment for GI: 254780610 and conserved domain: cd00165

>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.

Probab=99.11  E-value=2.1e-10  Score=81.84  Aligned_cols=70  Identities=37%  Similarity=0.544  Sum_probs=60.6

Q ss_pred             CCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEEECCCHHCCHHHHHHHHHHCCCCCEEEEE
Q ss_conf             75789999871768898999999985990499899328675804898899970560111102332222210144027899
Q gi|254780610|r   23 GRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITVPAAQKLNIAQENIPLDILYEDDDIIVI  102 (340)
Q Consensus        23 ~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~~~~~~~~~~~~~~~~~~IlyED~~llvi  102 (340)
T Consensus         1 ~RLd~~l~~~~~-~~Sr~~a~~~I~~g~V~VNg~~v~~~~~~v~~gd~i~i~~~~~~~----------~i~~~~~~~~~i   69 (70)
T cd00165           1 MRLDKILARLGL-APSRSEARQLIKHGHVLVNGKVVTKPSYKVKPGDVIEVDGKSIEE----------DIVYEDKKLLVV   69 (70)
T ss_pred             CCHHHHHHHCCC-CCCHHHHHHHHHCCEEEECCEEECCCCCCCCCCCEEEECCCCCCC----------CEEEECCCEEEE
T ss_conf             948899987487-158999999998193898999958888898999999987877886----------732326989996


Q ss_pred             E
Q ss_conf             6
Q gi|254780610|r  103 N  103 (340)
Q Consensus       103 n  103 (340)
T Consensus        70 ~   70 (70)
T cd00165          70 N   70 (70)
T ss_pred             C
T ss_conf             9