HHsearch alignment for GI: 254780610 and conserved domain: cd00506
>cd00506 PseudoU_synth_TruB_like PseudoU_synth_TruB: Pseudouridine synthase, TruB family. This group consists of eukaryotic, bacterial and archeal pseudouridine synthases similar to Escherichia coli TruB, Saccharomyces cerevisiae Pus4, M. tuberculosis TruB, S. cerevisiae Cbf5 and human dyskerin. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E. coli TruB, M. tuberculosis TruB and S. cerevisiae Pus4, make psi55 in the T loop of tRNAs. Pus4 catalyses the formation of psi55 in both cytoplasmic and mitochondrial tRNAs. Psi55 is almost universally conserved. S. cerevisiae Cbf5 and human dyskerin are nucleolar proteins that, with the help of guide RNAs, make the hundreds of psueudouridnes present in rRNA and small nuclear RNAs (snRNAs). Cbf5/Dyskerin is the catalytic subunit of eukaryotic box H/ACA small nucleolar ribonucleoprotein (snoRNP) particles. Mutations in human dysker
Probab=97.38 E-value=0.00035 Score=44.69 Aligned_cols=69 Identities=25% Similarity=0.361 Sum_probs=48.8
Q ss_pred EEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCC
Q ss_conf 27899624011104567875421002222221024433444436432444433232405721203578888999997211
Q gi|254780610|r 98 DIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGK 177 (340)
Q Consensus 98 ~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~~ 177 (340)
T Consensus 1 Gil~i~KP~G~TS~--------~vv~~vk~~~~--------~kKvGH~GTLDP~AtGvL~i~vG~a--TK~~~~~~~--- 59 (210)
T cd00506 1 GLFAVDKPQGPSSH--------DVVDTIRRIFL--------AEKVGHGGTLDPFATGVLVVGIGKA--TKLLKHLLA--- 59 (210)
T ss_pred CEEEEECCCCCCHH--------HHHHHHHHHHC--------CCCCCCCCCCCCCCCCEEEEEECHH--HHHHHHHCC---
T ss_conf 98999679999989--------99999999858--------7735768666974524289997788--879998755---
Q ss_pred CCCEEEEEEEEEE
Q ss_conf 3221334454320
Q gi|254780610|r 178 STRLKRAYYAMVW 190 (340)
Q Consensus 178 ~~~v~K~Y~Aiv~ 190 (340)
T Consensus 60 ---~~K~Y~~~~~ 69 (210)
T cd00506 60 ---ATKDYTAIGR 69 (210)
T ss_pred ---CCCEEEEEEE
T ss_conf ---9977879999