>cd02554 PseudoU_synth_RluF PseudoU_synth_RluF_like: Pseudouridine synthase, Escherichia coli RluF like. This group is comprised of bacterial proteins similar to Escherichia coli RluF. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RluF makes psi2604 in 23S RNA. psi2604 has only been detected in E. coli. It is absent from other eubacteria despite a precursor U at that site and from eukarya and archea which lack a precursor U at that site.

Probab=99.46 E-value=2e-13 Score=99.82 Aligned_cols=137 Identities=18% Similarity=0.198 Sum_probs=86.4 Q ss_pred EEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCC Q ss_conf 78996240111045678754210022222210244334444364324444332324057212035788889999972113 Q gi|254780610|r 99 IIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKS 178 (340) Q Consensus 99 llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~~~ 178 (340) T Consensus 2 YillnKP~G~v~s~~~~~-~~~~~~~l~-----------~~~rl~~vGRLD~~s~GLLLlTNDg~l~~~L~------hP~ 63 (164) T cd02554 2 YIAYNKPVGIDCTLERAD-EDNIIDFVN-----------PPPRIFPIGRLDKDSEGLILLTNDGDLVNKIL------HAD 63 (164) T ss_pred EEEEECCCCEEECCCCCC-CCCEEEECC-----------CCCCEEECCCCCCCCCCEEEEECCHHHHHHHC------CCC T ss_conf 999989998283878999-996699748-----------86777888678999856599957889997621------998 Q ss_pred CCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCEEEEEECHHHHH Q ss_conf 22133445432024332332110013434443322123444555553000012221011256677500123443115899 Q gi|254780610|r 179 TRLKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHLETGRTH 258 (340) Q Consensus 179 ~~v~K~Y~Aiv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~~~~~~~~slv~~~~~TGRtH 258 (340) T Consensus 64 ~~i~k~Y~V~~~~~i~~~~--l~~-l--------~~Gi~i-~~~~~~~~~v--~~~---~~------~~~~i~l~eGknr 120 (164) T cd02554 64 NNHEKEYLVTVNKPITDEF--IEG-M--------SNGVVI-LGTVTKPCKV--ERL---AK------DKFRIVLTQGLNR 120 (164) T ss_pred CCCCCEEEEEECCCCCHHH--HHH-H--------HCCEEE-CCEEEECEEE--EEE---CC------CEEEEEEEECCCH T ss_conf 8896299999956699999--998-7--------478598-9889802199--994---79------8499999926748 Q ss_pred HHHHHHHHHCCEEECCCC Q ss_conf 999999870978604154 Q gi|254780610|r 259 QIRVHMAHKGNPLIGDPL 276 (340) Q Consensus 259 QIRvhla~lG~PIvGD~~ 276 (340) T Consensus 121 qIRrmf~~~g~~V~~L~R 138 (164) T cd02554 121 QIRRMCEALGYRVTDLKR 138 (164) T ss_pred HHHHHHHHCCCEEEEEEE T ss_conf 999999986998848999

HHsearch alignment for GI: 254780610 and conserved domain: cd02554