HHsearch alignment for GI: 254780610 and conserved domain: cd02867
>cd02867 PseudoU_synth_TruB_4 PseudoU_synth_TruB_4: Pseudouridine synthase homolog 4. This group consists of Eukaryotic TruB proteins similar to Saccharomyces cerevisiae Pus4. S. cerevisiae Pus4, makes psi55 in the T loop of both cytoplasmic and mitochondrial tRNAs. Psi55 is almost universally conserved. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi).
Probab=96.63 E-value=0.0025 Score=39.57 Aligned_cols=77 Identities=25% Similarity=0.275 Sum_probs=46.8
Q ss_pred EEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCC---------------------CCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 2789962401110456787542100222222102443---------------------3444436432444433232405
Q gi|254780610|r 98 DIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLS---------------------SINGVKRPGIVHRLDKDTTGVM 156 (340)
Q Consensus 98 ~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~---------------------~~~~~~~~~lVHRLDr~TSGll 156 (340)
T Consensus 1 Gi~~vdKP~GiTS~~--------vv~~lk~~f~~s~~f~~~~~~~~~~~~~~~~r~k~~~~~~~KvGH~GTLDP~AtGvL 72 (312)
T cd02867 1 GVFAINKPSGITSAQ--------VLNDLKPLFLNSALFKDKIQRAVAKRGKKARRRKGRKRSKLKIGHGGTLDPLATGVL 72 (312)
T ss_pred CEEEEECCCCCCHHH--------HHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHCCCCCCCCEEEECCCCCCCCCCEE
T ss_conf 968874799999899--------999999983411102310222222101100000012457744402656787460338
Q ss_pred EEECCHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
Q ss_conf 7212035788889999972113221334454320
Q gi|254780610|r 157 VVAKNDLAHQKLSEQFVDHGKSTRLKRAYYAMVW 190 (340)
Q Consensus 157 l~Ak~~~a~~~l~~~f~~~~~~~~v~K~Y~Aiv~ 190 (340)
T Consensus 73 ~i~~G~a--TK~~~~~~------~~~K~Y~a~~~ 98 (312)
T cd02867 73 VVGVGAG--TKQLQDYL------SCSKTYEATGL 98 (312)
T ss_pred EEEECHH--HEECHHHC------CCCCEEEEEEE
T ss_conf 8998754--40458666------79917999999