HHsearch alignment for GI: 254780610 and conserved domain: cd02870

>cd02870 PseudoU_synth_RsuA_like Pseudouridine synthases are responsible for the synthesis of pseudouridine from uracil in ribosomal RNA. The RsuA subfamily includes Pseudouridine Synthase similar to Ribosomal small subunit pseudouridine 516 synthase. Most of the proteins in this family are bacterial proteins.
Probab=100.00  E-value=4.6e-33  Score=216.80  Aligned_cols=143  Identities=23%  Similarity=0.339  Sum_probs=109.4

Q ss_pred             EEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf             78996240111045678754210022222210244334444364324444332324057212035788889999972113
Q gi|254780610|r   99 IIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKS  178 (340)
Q Consensus        99 llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~~~  178 (340)
T Consensus         1 yi~lnKP~G~~~~~~~~~~~~tv~~ll~~~----------~~~l~~V~RLD~~TsGLll~t~d~~~~~~l~~------~~   64 (146)
T cd02870           1 YLLLNKPRGVVSTVRDPEGRPTVLDLLKDV----------GERLFPVGRLDYDTEGLLLLTNDGELANRLTH------PR   64 (146)
T ss_pred             CEEEECCCCCEECCCCCCCCCCHHHHHHHC----------CCCEEECCCCCCCCCCEEEEECCHHHHHHHHC------CC
T ss_conf             989999998286166998998578954305----------78672266689778765999579899998754------03


Q ss_pred             CCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCEEEEEECHHHHH
Q ss_conf             22133445432024332332110013434443322123444555553000012221011256677500123443115899
Q gi|254780610|r  179 TRLKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHLETGRTH  258 (340)
Q Consensus       179 ~~v~K~Y~Aiv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~~~~~~~~slv~~~~~TGRtH  258 (340)
T Consensus        65 ~~i~K~Y~a~v~g~~~~~~~~-----------~~~~g---~~~~~~~~~~~~~~~~~~-----~~~~s~l~v~l~tGR~h  125 (146)
T cd02870          65 YGVEKTYLVKVRGVPSEEELR-----------RLRAG---VELDDGKTAPAKVKVLSR-----DPKNTLLEVTLHEGRNR  125 (146)
T ss_pred             CCCCEEEEEEEECCCCHHHHH-----------HHHCC---EECCCCEEEEEEEEEECC-----CCCCEEEEEEECCCCHH
T ss_conf             542469999990269999999-----------98666---455898872148998237-----89959999997899439


Q ss_pred             HHHHHHHHHCCEEECCCC
Q ss_conf             999999870978604154
Q gi|254780610|r  259 QIRVHMAHKGNPLIGDPL  276 (340)
Q Consensus       259 QIRvhla~lG~PIvGD~~  276 (340)
T Consensus       126 QIR~h~~~lg~pI~~L~R  143 (146)
T cd02870         126 QVRRMFEAVGHPVLRLKR  143 (146)
T ss_pred             HHHHHHHHCCCEEEEEEE
T ss_conf             999999984997967999