HHsearch alignment for GI: 254780610 and conserved domain: pfam01479
>pfam01479 S4 S4 domain. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation. The S4 domain probably mediates binding to RNA.
Probab=98.55 E-value=9.4e-08 Score=65.99 Aligned_cols=48 Identities=40% Similarity=0.535 Sum_probs=43.6
Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEE
Q ss_conf 7578999987176889899999998599049989932867580489889
Q gi|254780610|r 23 GRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSF 71 (340)
Q Consensus 23 ~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I 71 (340)
T Consensus 1 ~RLd~~l~~~~~-~~Sr~~a~~~I~~G~V~VNg~~v~~~~~~v~~gD~i 48 (48)
T pfam01479 1 MRLDKVLARLGL-ASSRSEARQLIRHGHVRVNGKVVKDPSYRVKPGDVI 48 (48)
T ss_pred CCHHHHHHHCCC-CCCHHHHHHHHHCCCEEECCEEECCCCCCCCCCCCC
T ss_conf 966799998676-148999999998897798999957898688992999