HHsearch alignment of GI: 254780610 and MMDB domain: 1dm9_A_
>1dm9_A (A:) Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli}
Probab=99.88 E-value=8.8e-24 Score=161.12 Aligned_cols=124 Identities=19% Similarity=0.218 Sum_probs=98.9
Q ss_pred EECHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEEECCCHHC-------CHHHHH
Q ss_conf 9571136875789999871768898999999985990499899328675804898899970560111-------102332
Q gi|254780610|r 15 LLSDSTAEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITVPAAQKL-------NIAQEN 87 (340)
Q Consensus 15 ~V~~~~~g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~~~~~~~~-------~~~~~~ 87 (340)
+|+++++|+|||+||++.++ .+||+++++||+.|+|+|||++++ +++++..||.+.+........ ......
T Consensus 1 iv~~~~~g~RLDk~L~~~~~-~~sR~~a~~li~~G~V~VNG~~~~-~s~~v~~gD~i~i~~~~~~~~~~~~~~~~~~~~~ 78 (133)
T 1dm9_A 1 MKEKPAVEVRLDKWLWAARF-YKTRALAREMIEGGKVHYNGQRSK-PSKIVELNATLTLRQGNDERTVIVKAITEQRRPA 78 (133)
T ss_dssp ----CTTCCBHHHHHHHTTS-SSSHHHHHHHHHTTCEEETTEECC-TTCBCCTTCEEEEEETTEEEEEEECEEESCCCCH
T ss_pred CCCCCCCCEEHHHHHHHCCC-CCCHHHHHHHHHCCEEEECCEECC-CCCEECCCCEEEEEECCEEEEEEEEEEEECCCCC
T ss_conf 99887764629999987867-168999999998691888999734-5856159998999879986589999876225673
Q ss_pred HHHHHCCCCCEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHH
Q ss_conf 2222101440278996240111045678754210022222210244334444364324444332324057212035
Q gi|254780610|r 88 IPLDILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDL 163 (340)
Q Consensus 88 ~~~~IlyED~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~ 163 (340)
.++.++|||++.+++|||+|+.+|+.... .++++|||||+.|||.|+++++..
T Consensus 79 ~~~~~~~ed~~~~v~~kp~~~~~~~~~~~-----------------------~r~~~vgRLDk~~t~~ll~l~~dg 131 (133)
T 1dm9_A 79 SEAALLYEETAESVEKREKMALARKLNAL-----------------------TMPHPDRRPDKKERRDLLRFKHGD 131 (133)
T ss_dssp HHHGGGEEECHHHHHHHHHHHHHHHHHHT-----------------------C-----------------------
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHCCC-----------------------CCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 03566632368871134577776652245-----------------------578899786859999999875589