HHsearch alignment of GI: 254780610 and MMDB domain: 1v9f_A_
>1v9f_A (A:) Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli}
Probab=100.00 E-value=0 Score=463.50 Aligned_cols=311 Identities=38% Similarity=0.580 Sum_probs=256.2
Q ss_pred CCEEE-EEECHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEEECCCHHCCHHHHH
Q ss_conf 62499-99571136875789999871768898999999985990499899328675804898899970560111102332
Q gi|254780610|r 9 SSIKI-SLLSDSTAEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITVPAAQKLNIAQEN 87 (340)
Q Consensus 9 ~~~~~-~~V~~~~~g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~~~~~~~~~~~~~~ 87 (340)
+-|++ ++|+++++|+|||+||++.++ ++||+.++++|++|.|+|||+++..+++.+..++.+.............+..
T Consensus 2 ~~~~~~~~v~~~~~g~rl~~~L~~~~~-~~sr~~~~~~i~~G~V~vng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (325)
T 1v9f_A 2 QRVQLTATVSENQLGQRLDQALAEMFP-DYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQD 80 (325)
T ss_dssp ---------------------------------------------------------------------------CCCCC
T ss_pred CEEEEEEEECCCCCCCHHHHHHHHHCC-CCCHHHHHHHHHCCCEEECCEECCCCCEECCCCCEEEECCCCCCCCCCCCCC
T ss_conf 748999998976488669999998668-6799999999986998999999178320625898997325433222333344
Q ss_pred HHHHHCCCCCEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHH
Q ss_conf 22221014402789962401110456787542100222222102443344443643244443323240572120357888
Q gi|254780610|r 88 IPLDILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQK 167 (340)
Q Consensus 88 ~~~~IlyED~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~ 167 (340)
.++.|||||++++|+|||+|++|||+++...+|+...+....... .....+++|||||++|||+||+|||..+++.
T Consensus 81 ~~~~il~ed~~~ivvnKP~Gl~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~vhRLD~~TSGlll~Ak~~~~~~~ 156 (325)
T 1v9f_A 81 IPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI----ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTR 156 (325)
T ss_dssp CCCCEEEECSSEEEEEECSSCCSSCBTTBSSSSHHHHHHHHCGGG----GGSGGGGBCCCCCTTCEEEEEEESSHHHHHH
T ss_pred CCCCEEEECCCEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCC----CCCCCEEEEECCCCCCCCCEEEECCHHHHHH
T ss_conf 541125101105787078886548987778886323211344433----3334214653258898651466402588999
Q ss_pred HHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCE
Q ss_conf 89999972113221334454320243323321100134344433221234445555530000122210112566775001
Q gi|254780610|r 168 LSEQFVDHGKSTRLKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSL 247 (340)
Q Consensus 168 l~~~f~~~~~~~~v~K~Y~Aiv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~~~~~~~~sl 247 (340)
|.++|. .+.+.|+|+|+|.|.+..+.+.+..+........ .......+++|.|+|.+... ...+|+
T Consensus 157 l~~~~~----~~~~~K~Y~a~v~g~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~~~~~~~~~-----~~~~sl 222 (325)
T 1v9f_A 157 LVESLQ----RREITREYEAVAIGHMTAGGTVDEPISRHPTKRT-----HMAVHPMGKPAVTHYRIMEH-----FRVHTR 222 (325)
T ss_dssp HHHHHH----TTCSEEEEEEEEESCCCCCEEEECCEEECSSCTT-----CEEECTTSBCCEEEEEEEEE-----CSSEEE
T ss_pred HHHHHH----CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCC-----EEEECCCCCEEEEEEEEEEE-----CCCCEE
T ss_conf 998750----1210124234301354745662355335766653-----05876887157899898653-----388457
Q ss_pred EEEEECHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHCEEEEECCCCCCEEEEECCCC
Q ss_conf 23443115899999999870978604154477554443345701355440798044321000424688976899984997
Q gi|254780610|r 248 LKCHLETGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSLSFSHPRNNQDMDFQVPIP 327 (340)
Q Consensus 248 v~~~~~TGRtHQIRvhla~lG~PIvGD~~YG~~~~~~~~~~~~~~~~~~~~~~r~~LHA~~l~f~hP~t~~~~~f~aplP 327 (340)
++|+|.|||+||||+|||++|||||||.+||........ .............+++|||+.|+|.||.+++.++|+||+|
T Consensus 223 ~~~~~~TGR~HQIR~hla~~G~PIvGD~~Yg~~~~~~~~-l~~g~~~~~~~~~~~~Lha~~l~~~~p~~~~~~~~~ap~P 301 (325)
T 1v9f_A 223 LRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKG-ASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 301 (325)
T ss_dssp EEEEESCCCTTHHHHHHHHTTCCBTTCTTTTCCCCCCTT-CCHHHHHHHHHCCSCSEEEEEEEEECTTTCCEEEEECCCC
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHCCCCHHHHCCCCEEECCCCCCEEEEEECCH
T ss_conf 999977883179999999839976687778985545443-3166777651586434653705857789998899991797
Q ss_pred HHHHHHHHHHHC
Q ss_conf 899999998851
Q gi|254780610|r 328 EDMLTVIRKLNE 339 (340)
Q Consensus 328 ~~~~~~l~~L~~ 339 (340)
++|..+|++|+.
T Consensus 302 ~~f~~~l~~l~~ 313 (325)
T 1v9f_A 302 QDMVELIEVMRA 313 (325)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999730