HHsearch alignment of GI: 254780610 and MMDB domain: 1vio_A_1-57
>1vio_A (A:1-57) Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae}
Probab=98.82 E-value=8.5e-09 Score=71.83 Aligned_cols=52 Identities=21% Similarity=0.340 Sum_probs=48.1
Q ss_pred CCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEEE
Q ss_conf 875789999871768898999999985990499899328675804898899970
Q gi|254780610|r 22 EGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITV 75 (340)
Q Consensus 22 g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~~ 75 (340)
.+|||+||++.. .+||++++++|++|.|+|||++++++++.+.+||.|.+.-
T Consensus 2 ~~RLDk~L~~~~--~~SR~~a~~lI~~g~V~Vng~~i~~~~~~v~~~d~i~v~g 53 (57)
T 1vio_A 2 SLRLDKFIAENV--GLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFED 53 (57)
T ss_dssp CEEHHHHHHHHH--TCCHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEETT
T ss_pred CHHHHHHHHHCC--CCCHHHHHHHHHCCCEEECCEECCCCCEECCCCCEEEEEE
T ss_conf 558999999877--8589999999987978999999154895868878787620