HHsearch alignment of GI: 254780610 and MMDB domain: 1vio_A_1-57

>1vio_A (A:1-57) Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae}
Probab=98.82  E-value=8.5e-09  Score=71.83  Aligned_cols=52  Identities=21%  Similarity=0.340  Sum_probs=48.1

Q ss_pred             CCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEEE
Q ss_conf             875789999871768898999999985990499899328675804898899970
Q gi|254780610|r   22 EGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITV   75 (340)
Q Consensus        22 g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~~   75 (340)
                      .+|||+||++..  .+||++++++|++|.|+|||++++++++.+.+||.|.+.-
T Consensus         2 ~~RLDk~L~~~~--~~SR~~a~~lI~~g~V~Vng~~i~~~~~~v~~~d~i~v~g   53 (57)
T 1vio_A            2 SLRLDKFIAENV--GLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFED   53 (57)
T ss_dssp             CEEHHHHHHHHH--TCCHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEETT
T ss_pred             CHHHHHHHHHCC--CCCHHHHHHHHHCCCEEECCEECCCCCEECCCCCEEEEEE
T ss_conf             558999999877--8589999999987978999999154895868878787620