HHsearch alignment of GI: 254780610 and MMDB domain: 1vio_A_58-243
>1vio_A (A:58-243) Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae}
Probab=100.00 E-value=5.6e-42 Score=269.56 Aligned_cols=184 Identities=16% Similarity=0.184 Sum_probs=134.5
Q ss_pred CCCCCEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 01440278996240111045678754210022222210244334444364324444332324057212035788889999
Q gi|254780610|r 93 LYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQF 172 (340)
Q Consensus 93 lyED~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f 172 (340)
.|||++++|||||+|++||++++... ++.+.+..+.. .++.+|||||++||||||||||..++..+..+|
T Consensus 1 ~yed~~~ivinKP~gl~~~~~~~~~~-~~~~~l~~~~~---------~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~~ 70 (186)
T 1vio_A 1 WIEEGQYFMLNKPQGCVCSNDDGDYP-TIYQFFDYPLA---------GKLHSAGRLDVDTTGLVLLTDDGQWSHRITSPK 70 (186)
T ss_dssp SSCCCCEEEEEECTTCBSSCCC--CC-BGGGGSCTTGG---------GGCEESSCCCTTCEEEEEEESCHHHHHHHHCTT
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCE-EEEEEECCCCC---------CEEEECCCCCCCCCCEEEEECCCCCCCCCCCCC
T ss_conf 22221035540258864333443201-45420024533---------136540212401221378741775320001112
Q ss_pred HHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCEEEEEE
Q ss_conf 97211322133445432024332332110013434443322123444555553000012221011256677500123443
Q gi|254780610|r 173 VDHGKSTRLKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHL 252 (340)
Q Consensus 173 ~~~~~~~~v~K~Y~Aiv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~~~~~~~~slv~~~~ 252 (340)
..++|+|+|+|.|.+..+...+....... .+. ........ ......++++++|
T Consensus 71 ------~~~~k~y~~~v~g~~~~~~~~~~~~~~~~---------------~~~-~~~~~~~~-----~~~~~~~~~~~~~ 123 (186)
T 1vio_A 71 ------HHCEKTYLVTLADPVEENYSAACAEGILL---------------RGE-KEPTKPAK-----LEILDDYNVNLTI 123 (186)
T ss_dssp ------SCCCEEEEEEESSCCCTTHHHHHHHCCCC---------------TTC-SSCCCCCE-----EEECSSSEEEEEE
T ss_pred ------CCCCEEEEEEEEEECCHHHHHHHHCCEEC---------------CCC-CCCEEEEE-----ECCCCCCEEEEEE
T ss_conf ------45520112599851204478898536561---------------683-01023322-----0135684489885
Q ss_pred CHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHCEEEEECCCC
Q ss_conf 1158999999998709786041544775544433457013554407980443210004246889
Q gi|254780610|r 253 ETGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSLSFSHPRN 316 (340)
Q Consensus 253 ~TGRtHQIRvhla~lG~PIvGD~~YG~~~~~~~~~~~~~~~~~~~~~~r~~LHA~~l~f~hP~t 316 (340)
.|||+||||+||+++||||+||.+||.+.......+.. .....+.++.||+..+.|.||.+
T Consensus 124 ~tGr~hQIR~h~a~lg~pIvgD~~yg~~~~~~~~~l~~---g~~r~l~~~~l~~~~l~~~~~~~ 184 (186)
T 1vio_A 124 SEGRYHQVKRMFAALGNKVVGLHRWKIGDVVLDESLEE---GEYRPLTQSEIEKLVEGGSHHHH 184 (186)
T ss_dssp SCCCTTHHHHHHHHTTCCEEEEEEEEETTEECCTTCCT---TCEEECCHHHHHHTC--------
T ss_pred CCCCCHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCC---CCEEECCHHHHHHHHHCCCCCCC
T ss_conf 05760799999998599793889999887247999999---76259999999999957986545