HHsearch alignment of GI: 254780610 and MMDB domain: 2aus_C_31-245

>2aus_C (C:31-245) Pseudouridine synthase; isomerase, structural protein, isomerase/structural protein complex; 2.10A {Pyrococcus abyssi} PDB: 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3hjw_A* 3hjy_A
Probab=96.94  E-value=0.00048  Score=43.51  Aligned_cols=84  Identities=20%  Similarity=0.240  Sum_probs=53.8

Q ss_pred             CCCEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf             44027899624011104567875421002222221024433444436432444433232405721203578888999997
Q gi|254780610|r   95 EDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVD  174 (340)
Q Consensus        95 ED~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~  174 (340)
                      .-+.+|++|||.|+.+|        .+++.+...+..        .+.+-..-||-..||+++++-+...  .+.+.|. 
T Consensus        14 ~~~G~l~~~KP~g~tS~--------~vv~~ik~~~~~--------~kvGh~GTLDp~atGvl~i~vg~aT--kl~~~~~-   74 (215)
T 2aus_C           14 IQYGVINLDKPPGPTSH--------EVVAWIKRILNL--------EKAGHGGTLDPKVSGVLPVALERAT--RVVQALL-   74 (215)
T ss_dssp             HHTEEEEEEECSSSCHH--------HHHHHHHHHTTC--------SCEEESSCCCTTCEEEEEEEEGGGG--GGGGGGT-
T ss_pred             HCCCEEEEECCCCCCHH--------HHHHHHHHHHCC--------CCCCCCCCCCCCCCCCEEEEECHHH--HHHHHHC-
T ss_conf             47838999579989999--------999999987183--------4257898789865034767873899--8999974-


Q ss_pred             HCCCCCEEEEEEEEEECCCCCCCCCCCC
Q ss_conf             2113221334454320243323321100
Q gi|254780610|r  175 HGKSTRLKRAYYAMVWGIPLPDSGIINA  202 (340)
Q Consensus       175 ~~~~~~v~K~Y~Aiv~G~~~~~~g~i~~  202 (340)
                           .-.|+|.|.+..-...++..++.
T Consensus        75 -----~~~K~Y~~~~~~g~~t~t~d~~~   97 (215)
T 2aus_C           75 -----PAGKEYVALMHLHGDVPEDKIRA   97 (215)
T ss_dssp             -----TCCEEEEEEEEESSCCCHHHHHH
T ss_pred             -----CCCCEEEEEEEECCCCCCCHHHE
T ss_conf             -----58859999988723444440013