HHsearch alignment of GI: 254780610 and MMDB domain: 2gml_A_
>2gml_A (A:) Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome, RNA modifying enzyme, isomerase; 2.60A {Escherichia coli}
Probab=100.00 E-value=0 Score=330.54 Aligned_cols=212 Identities=15% Similarity=0.044 Sum_probs=163.7
Q ss_pred HHHHHHCCCCCEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHH
Q ss_conf 22222101440278996240111045678754210022222210244334444364324444332324057212035788
Q gi|254780610|r 87 NIPLDILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQ 166 (340)
Q Consensus 87 ~~~~~IlyED~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~ 166 (340)
+.++.|||||++|+|||||+|++||+++.... ++.+.+. ...++++|||||++||||||||++.+++.
T Consensus 4 ~~~~~ii~ed~~~ivvnKP~G~~~~~~~~~~~-~~~~~l~-----------~~~~~~~vhRLD~~TSGlll~a~~~~~~~ 71 (237)
T 2gml_A 4 SHHHHHHGSDLVLIALNKPVGIVSTTEDGERD-NIVDFVN-----------HSKRVFPIGRLDKDSQGLIFLTNHGDLVN 71 (237)
T ss_dssp ---------CCCEEEEEECTTCBCCSSSSCSS-BHHHHSC-----------CSSCCEEESCCCTTCEEEEEEESCHHHHH
T ss_pred CCCCCCCCCCEEEEEEECCCCEEECCCCCCCC-CCHHHCC-----------CCCCEEECCCCCCCCCCCEEEECCHHHHH
T ss_conf 55555568523999997999389722899999-7442157-----------64561141246888888589841668888
Q ss_pred HHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCC
Q ss_conf 88999997211322133445432024332332110013434443322123444555553000012221011256677500
Q gi|254780610|r 167 KLSEQFVDHGKSTRLKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVS 246 (340)
Q Consensus 167 ~l~~~f~~~~~~~~v~K~Y~Aiv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~~~~~~~~s 246 (340)
.+..++. .+.|+|+|+|.|.+..+.+.+..+.... .+.+.+... ....+.+
T Consensus 72 ~~~~~~~------~i~K~Y~a~v~G~~~~~~~~~~~~~~~~------------------~~~~~~~~~-----~~~~~~~ 122 (237)
T 2gml_A 72 KILRAGN------DHEKEYLVTVDKPITEEFIRGXSAGVPI------------------LGTVTKKCK-----VKKEAPF 122 (237)
T ss_dssp HHHHHHH------HSCEEEEEEESSCCCHHHHHHHSSCCEE------------------TTEECCCCE-----EEEEETT
T ss_pred HHHHHCC------CCCEEEEEEECCCCCHHHHHHHHCCCEE------------------CCEEEECHH-----HCCCCCE
T ss_conf 8765313------5514887785267999999999759887------------------775742000-----0356654
Q ss_pred EEEEEECHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCC--------HHHHHHCCCCCHHHHHCEEEEECCCCCC
Q ss_conf 12344311589999999987097860415447755444334570--------1355440798044321000424688976
Q gi|254780610|r 247 LLKCHLETGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNN--------NAKSAILSLARQALHAHSLSFSHPRNNQ 318 (340)
Q Consensus 247 lv~~~~~TGRtHQIRvhla~lG~PIvGD~~YG~~~~~~~~~~~~--------~~~~~~~~~~r~~LHA~~l~f~hP~t~~ 318 (340)
++++.|.|||+||||+||+++||||+||.+||...........+ ..........+++|||++|.|.||.|++
T Consensus 123 ~v~~~~~tGR~HQIR~h~~~~G~pI~gD~~y~~~~~~~~~l~~g~~~~l~~~e~~~~~~~~~~~~Lha~~l~f~~p~t~e 202 (237)
T 2gml_A 123 VFRITLVQGLNRQIRRXCEHFGYEVKKLERTRIXNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEVKPKAKAKPKTAG 202 (237)
T ss_dssp EEEEEECCCSTTHHHHHHHHTTCCEEEEEEEEETTEECTTCCTTCEEECCHHHHHHHHTTSTTCC---------------
T ss_pred EEEEEEECCCCHHHHHHHHHCCCEEEEEEEEEECCEEECCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 99999816886199999998699766699999888880897997838999999999998763345666886667887666
Q ss_pred EEEEECCCCHHHHHHHHHHHC
Q ss_conf 899984997899999998851
Q gi|254780610|r 319 DMDFQVPIPEDMLTVIRKLNE 339 (340)
Q Consensus 319 ~~~f~aplP~~~~~~l~~L~~ 339 (340)
.+.|+||+|++|.++++.|..
T Consensus 203 ~~~~~~p~p~~~~~~~~~l~~ 223 (237)
T 2gml_A 203 IKRPVVKXEKTAEKGGRPASN 223 (237)
T ss_dssp ---------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCC
T ss_conf 678877777777888898889