HHsearch alignment of GI: 254780610 and MMDB domain: 2k6p_A_
>2k6p_A (A:) Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=99.79 E-value=7.5e-21 Score=143.63 Aligned_cols=90 Identities=20% Similarity=0.211 Sum_probs=78.5
Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEEECCCH-HCCHHHHHHHHHHCCCCCEEEE
Q ss_conf 757899998717688989999999859904998993286758048988999705601-1110233222221014402789
Q gi|254780610|r 23 GRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITVPAAQ-KLNIAQENIPLDILYEDDDIIV 101 (340)
Q Consensus 23 ~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~~~~~~-~~~~~~~~~~~~IlyED~~llv 101 (340)
+|||+||.+.++ ..||++++++|++|+|+|||+++. ++++|..||.|.+...... .....+...++.|+|||++++|
T Consensus 1 mRLD~~L~~~~~-~~sr~~~~k~i~~g~I~VNg~~~~-~~~~v~~gD~i~i~~~~~~~~~~~~~~~~~~~i~yed~~~lv 78 (92)
T 2k6p_A 1 MRIDKFLQSVGL-VKRRVLATDMCNVGAVWLNGSCAK-ASKEVKAGDTISLHYLKGIEEYTILQIPALKNVPRKDTHLYI 78 (92)
T ss_dssp CBHHHHSTTTTS-CCCCCSSCCHHHHTCCEETTEECC-TTCBCCTTCEEEECCSSCCEEEEECCCCCCSCCCSSSTTSSE
T ss_pred CCHHHHHHHCCC-CCCHHHHHHHHHCCCEEECCEEEE-ECCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCHHHHCCCE
T ss_conf 967899987277-159999999998997998989986-624718999999984896368999978865898645506159
Q ss_pred EECCCHHHCCCCC
Q ss_conf 9624011104567
Q gi|254780610|r 102 INKPAGLVVHPAP 114 (340)
Q Consensus 102 inKPaGl~vhp~~ 114 (340)
+|||+||+|||+.
T Consensus 79 inKpagl~~hp~~ 91 (92)
T 2k6p_A 79 APKTKELEHHHHH 91 (92)
T ss_dssp EECCCC-------
T ss_pred EECHHCCCCCCCC
T ss_conf 8063216244457