HHsearch alignment of GI: 254780610 and MMDB domain: 2oml_A_
>2oml_A (A:) Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia coli}
Probab=100.00 E-value=0 Score=293.86 Aligned_cols=183 Identities=23% Similarity=0.192 Sum_probs=149.6
Q ss_pred HHHHHCCCCCEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHH
Q ss_conf 22221014402789962401110456787542100222222102443344443643244443323240572120357888
Q gi|254780610|r 88 IPLDILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQK 167 (340)
Q Consensus 88 ~~~~IlyED~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~ 167 (340)
.+++|||||++++|||||+|++|||++++...++..++. ..++++|||||++|||+||||++.+++..
T Consensus 2 ~~~~vl~ed~~~ivinKP~g~~~~~~~~~~~~~~~~~l~------------~~~l~~vhRLD~~tsGlll~a~~~~~~~~ 69 (189)
T 2oml_A 2 TRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP------------VQGVYAAGRLDRDSEGLLVLTNNGALQAR 69 (189)
T ss_dssp ------CCCCCEEEEEECTTBCSCSSCCTTCBCGGGTCC------------CSSCEESSCCCTTCEEEEEEESCHHHHHH
T ss_pred CCCCCCCCCCEEEEEECCCCEEEECCCCCCCCCHHHHCC------------CCCCEECCCCCCCCCCEEEEECCCHHHHH
T ss_conf 865778899889999899983860779988865889637------------12534731026120007999325302221
Q ss_pred HHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCEECCCCCEEECCCCCCCCC
Q ss_conf 899999721132213344543202433233211001343444332212-3444555553000012221011256677500
Q gi|254780610|r 168 LSEQFVDHGKSTRLKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRA-VKGIDDKTADSAITHYQTIEIYNKNSNFAVS 246 (340)
Q Consensus 168 l~~~f~~~~~~~~v~K~Y~Aiv~G~~~~~~g~i~~~l~~~~~~~~~~~-~~~~~~~~~k~a~T~~~~l~~~~~~~~~~~s 246 (340)
+..+| +.+.|+|+|+|.|.+.++.+++..++.....+..+.. ........++.+.+.|.++. .....+
T Consensus 70 l~~~~------~~i~k~Y~a~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 138 (189)
T 2oml_A 70 LTQPG------KRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRER-----KSIPTS 138 (189)
T ss_dssp HHSTT------SCCCEEEEEEEESCCCHHHHHHHHHCCEETTEECCCCEEEEECCCTTCCCCSSCCC-C-----TTSCEE
T ss_pred CCCCC------EEEEEEEEEEEECCCCHHHHHHHHCCCEECCCEEEEEEEEEECCCCCCEEEEEEEEEE-----EECCCC
T ss_conf 03123------0377899999932799899999864945078515765799953566410245578887-----405650
Q ss_pred EEEEEECHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHCE
Q ss_conf 12344311589999999987097860415447755444334570135544079804432100
Q gi|254780610|r 247 LLKCHLETGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHS 308 (340)
Q Consensus 247 lv~~~~~TGRtHQIRvhla~lG~PIvGD~~YG~~~~~~~~~~~~~~~~~~~~~~r~~LHA~~ 308 (340)
+++++|.|||+||||+||+++||||+||.+||.+.. .+.|+.||||+
T Consensus 139 ~~~~~l~tGr~hQIR~hl~~lg~pIvgD~~Y~~~~~---------------~~~~l~l~~~R 185 (189)
T 2oml_A 139 WLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDY---------------SLDNLANGEWR 185 (189)
T ss_dssp EEEEEESCCCTTHHHHHHHHTTCCEEEEEEEEETTE---------------ECTTCCTTCEE
T ss_pred EEEEEEECCCHHHHHHHHHHCCCEEEEEEEEEECCE---------------ECCCCCCCCCE
T ss_conf 799999459779999999986996989899999998---------------50788998837