HHsearch alignment of GI: 254780610 and MMDB domain: 3dh3_A_64-290
>3dh3_A (A:64-290) Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=100.00 E-value=0 Score=317.64 Aligned_cols=205 Identities=16% Similarity=0.065 Sum_probs=160.2
Q ss_pred CCCCEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHH
Q ss_conf 14402789962401110456787542100222222102443344443643244443323240572120357888899999
Q gi|254780610|r 94 YEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFV 173 (340)
Q Consensus 94 yED~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~ 173 (340)
-||++|+|||||+||+||+++++.. |+.+.+..+ .++.+|||||++|||||||||+.+++..+..++
T Consensus 1 aEd~~~ivinKP~Gl~~~~~~~~~~-~l~~~l~~~-----------~~l~~vhRLD~~TSGlll~ak~~~~~~~l~~~~- 67 (227)
T 3dh3_A 1 AEDLVLIALNKPVGIVSTTEDGERD-NIVDFVNHS-----------KRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAG- 67 (227)
T ss_dssp GGGCCEEEEEECTTCBCCCCSSCTT-BHHHHHTCS-----------SCCEESSCCCTTCEEEEEEESCTTHHHHHHCGG-
T ss_pred CCCEEEEECCCCCCEEECCCCCCCC-CCHHHCCCC-----------CCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHH-
T ss_conf 2311356436665212033347777-501101344-----------431224656767631489943987998887631-
Q ss_pred HHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCEEEEEEC
Q ss_conf 72113221334454320243323321100134344433221234445555530000122210112566775001234431
Q gi|254780610|r 174 DHGKSTRLKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHLE 253 (340)
Q Consensus 174 ~~~~~~~v~K~Y~Aiv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~~~~~~~~slv~~~~~ 253 (340)
++++|+|+|+|.|.+.++.+.+..++.... ..+.+.+.. ....++++++.+.
T Consensus 68 -----~~i~K~Y~a~v~G~~~~~~~~~~~~~~~~~------------------~~~~~~~~~-----~~~~~~~~~~~~~ 119 (227)
T 3dh3_A 68 -----NDHEKEYLVTVDKPITEEFIRGMSAGVPIL------------------GTVTKKCKV-----KKEAPFVFRITLV 119 (227)
T ss_dssp -----GCCCEEEEEEESSCCCHHHHHHHHTCCBCS------------------SSBCCCCEE-----EECSSSEEEEEES
T ss_pred -----CCCCCCCCEEECCCCCHHHHHHHHCCCEEC------------------CEEEEEEEE-----EECCCCEEEEEEC
T ss_conf -----244322112760579999999997599845------------------657442577-----5226725899925
Q ss_pred HHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCC--------HHHHHHCCCCCHHHHHCEEEEECCCCCCEEEEECC
Q ss_conf 1589999999987097860415447755444334570--------13554407980443210004246889768999849
Q gi|254780610|r 254 TGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNN--------NAKSAILSLARQALHAHSLSFSHPRNNQDMDFQVP 325 (340)
Q Consensus 254 TGRtHQIRvhla~lG~PIvGD~~YG~~~~~~~~~~~~--------~~~~~~~~~~r~~LHA~~l~f~hP~t~~~~~f~ap 325 (340)
|||+||||+||+++||||+||.+||.+.........+ ..........+++|||+++.|+||.+++.++|+||
T Consensus 120 tGr~hQIR~h~a~~g~pI~gd~~y~~~~~~l~~l~~g~~r~l~~~e~~~~~~~~~~~~Lha~~l~f~~p~~~e~~~~~ap 199 (227)
T 3dh3_A 120 QGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEVKPKAKAKPKTAGIKRPVVK 199 (227)
T ss_dssp CCCTTHHHHHHHHTTCCEEEEEEEEETTEECTTCCTTCEEECCHHHHHHHHHTCCCCSSCC-------------------
T ss_pred CCCCHHHHHHHHHCCCEEEEEEEEEECCEECCCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 88525999999987996766999998787748979977388999999999987632456678876678877666788777
Q ss_pred CCHHHHHHHHHHHC
Q ss_conf 97899999998851
Q gi|254780610|r 326 IPEDMLTVIRKLNE 339 (340)
Q Consensus 326 lP~~~~~~l~~L~~ 339 (340)
+|++|..++++|++
T Consensus 200 ~p~~~~~~~~~l~~ 213 (227)
T 3dh3_A 200 MEKTAEKGGRPASN 213 (227)
T ss_dssp --------------
T ss_pred CCCCCCCCCCCCCC
T ss_conf 77787888998889