HHsearch results for GI: 254780610 and protein with PDBid: 1ksk_A

>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=100.00  E-value=4.2e-45  Score=287.25  Aligned_cols=207  Identities=18%  Similarity=0.274  Sum_probs=158.0

Q ss_pred             CCCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEEECCCHHCCHHHHHHHHHHCCCCCEEE
Q ss_conf             68757899998717688989999999859904998993286758048988999705601111023322222101440278
Q gi|254780610|r   21 AEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITVPAAQKLNIAQENIPLDILYEDDDII  100 (340)
Q Consensus        21 ~g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~~~~~~~~~~~~~~~~~~IlyED~~ll  100 (340)
                      ..+|||+||++.+  .+||++++++|++|+|+|||+++++++++|.+||.|.+...     .        -..+|+..++
T Consensus         2 ~~iRLdk~Ls~~~--~~SR~~a~~lI~~G~V~VNg~~v~~~~~~V~~~d~I~v~~~-----~--------i~~~~~~~~i   66 (234)
T 1ksk_A            2 SHMRLDKFIAQQL--GVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGN-----P--------LAQQHGPRYF   66 (234)
T ss_dssp             CCEEHHHHHHHHH--TCCHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEETTE-----E--------ECCCCCCCEE
T ss_pred             CCCHHHHHHHHCC--CCCHHHHHHHHHCCEEEECCEECCCCCCCCCCCCEEEECCC-----E--------EEECCCCEEE
T ss_conf             7522999998778--96899999999889599999995678858177666885031-----4--------5204574799


Q ss_pred             EEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCC
Q ss_conf             99624011104567875421002222221024433444436432444433232405721203578888999997211322
Q gi|254780610|r  101 VINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTR  180 (340)
Q Consensus       101 vinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~~~~~  180 (340)
                      ++|||+|+.||++... ..++.+.+..         ....++++|||||++||||||+|++..++..+..+      .+.
T Consensus        67 vlnKP~G~~~~~~~~~-~~~~~~~l~~---------~~~~~~~~V~RLD~dTsGLll~t~d~~~~~~l~~~------~~~  130 (234)
T 1ksk_A           67 MLNKPQGYVCSTDDPD-HPTVLYFLDE---------PVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRITSP------RHH  130 (234)
T ss_dssp             EEEECTTCBSSSSCSS-SCBGGGGCCC---------TTGGGCEESSCCCTTCEEEEEEESCHHHHHHHHCT------TSC
T ss_pred             EEECCCCCCCCCCCCC-CCEEEECCCC---------CCCCEEEECCCCCCCCCCEEEECCCHHHHHHHHHH------HCC
T ss_conf             9989998676664554-3144301345---------44550765022588886548750586788877555------228


Q ss_pred             EEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCEEEEEECHHHHHHH
Q ss_conf             13344543202433233211001343444332212344455555300001222101125667750012344311589999
Q gi|254780610|r  181 LKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHLETGRTHQI  260 (340)
Q Consensus       181 v~K~Y~Aiv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~~~~~~~~slv~~~~~TGRtHQI  260 (340)
                      +.|+|+|.|.|.+.++..           ...++.+    ...++.+.|.+..++...      .++++|.+.|||+|||
T Consensus       131 i~k~Y~~~v~g~~~~~~~-----------~~l~~~v----~~~~~~~~~~~~~~~~~~------~~~l~i~l~tGR~hQI  189 (234)
T 1ksk_A          131 CEKTYLVTLESPVADDTA-----------EQFAKGV----QLHNEKDLTKPAVLEVIT------PTQVRLTISEGRYHQV  189 (234)
T ss_dssp             CCEEEEEEESSCCCTTHH-----------HHHHHCC----CCTTCSSCCCCCEEEEEE------TTEEEEEESCCCTTHH
T ss_pred             CCEEEEECCCCCCCHHHH-----------HHHHEEE----EECCCEEEEEEEEEECCC------CCEEEEEEECCCHHHH
T ss_conf             857996055788877675-----------4542156----757955456567852159------9589999824973899


Q ss_pred             HHHHHHHCCEEECCCC--CCC
Q ss_conf             9999870978604154--477
Q gi|254780610|r  261 RVHMAHKGNPLIGDPL--YGK  279 (340)
Q Consensus       261 Rvhla~lG~PIvGD~~--YG~  279 (340)
                      |+||+++||||++...  ||.
T Consensus       190 R~h~~~~G~pV~~L~Ri~~G~  210 (234)
T 1ksk_A          190 KRMFAAVGNHVVELHRERIGG  210 (234)
T ss_dssp             HHHHHHTTCCEEEEEEEEETT
T ss_pred             HHHHHHCCCEEEEEEEEEECC
T ss_conf             999998699798999999876