HHsearch results for GI: 254780610 and protein with PDBid: 1ksk_A
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=100.00 E-value=4.2e-45 Score=287.25 Aligned_cols=207 Identities=18% Similarity=0.274 Sum_probs=158.0
Q ss_pred CCCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEEECCCHHCCHHHHHHHHHHCCCCCEEE
Q ss_conf 68757899998717688989999999859904998993286758048988999705601111023322222101440278
Q gi|254780610|r 21 AEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITVPAAQKLNIAQENIPLDILYEDDDII 100 (340)
Q Consensus 21 ~g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~~~~~~~~~~~~~~~~~~IlyED~~ll 100 (340)
..+|||+||++.+ .+||++++++|++|+|+|||+++++++++|.+||.|.+... . -..+|+..++
T Consensus 2 ~~iRLdk~Ls~~~--~~SR~~a~~lI~~G~V~VNg~~v~~~~~~V~~~d~I~v~~~-----~--------i~~~~~~~~i 66 (234)
T 1ksk_A 2 SHMRLDKFIAQQL--GVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGN-----P--------LAQQHGPRYF 66 (234)
T ss_dssp CCEEHHHHHHHHH--TCCHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEETTE-----E--------ECCCCCCCEE
T ss_pred CCCHHHHHHHHCC--CCCHHHHHHHHHCCEEEECCEECCCCCCCCCCCCEEEECCC-----E--------EEECCCCEEE
T ss_conf 7522999998778--96899999999889599999995678858177666885031-----4--------5204574799
Q ss_pred EEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCC
Q ss_conf 99624011104567875421002222221024433444436432444433232405721203578888999997211322
Q gi|254780610|r 101 VINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTR 180 (340)
Q Consensus 101 vinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~~~~~ 180 (340)
++|||+|+.||++... ..++.+.+.. ....++++|||||++||||||+|++..++..+..+ .+.
T Consensus 67 vlnKP~G~~~~~~~~~-~~~~~~~l~~---------~~~~~~~~V~RLD~dTsGLll~t~d~~~~~~l~~~------~~~ 130 (234)
T 1ksk_A 67 MLNKPQGYVCSTDDPD-HPTVLYFLDE---------PVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRITSP------RHH 130 (234)
T ss_dssp EEEECTTCBSSSSCSS-SCBGGGGCCC---------TTGGGCEESSCCCTTCEEEEEEESCHHHHHHHHCT------TSC
T ss_pred EEECCCCCCCCCCCCC-CCEEEECCCC---------CCCCEEEECCCCCCCCCCEEEECCCHHHHHHHHHH------HCC
T ss_conf 9989998676664554-3144301345---------44550765022588886548750586788877555------228
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCEEEEEECHHHHHHH
Q ss_conf 13344543202433233211001343444332212344455555300001222101125667750012344311589999
Q gi|254780610|r 181 LKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHLETGRTHQI 260 (340)
Q Consensus 181 v~K~Y~Aiv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~~~~~~~~slv~~~~~TGRtHQI 260 (340)
+.|+|+|.|.|.+.++.. ...++.+ ...++.+.|.+..++... .++++|.+.|||+|||
T Consensus 131 i~k~Y~~~v~g~~~~~~~-----------~~l~~~v----~~~~~~~~~~~~~~~~~~------~~~l~i~l~tGR~hQI 189 (234)
T 1ksk_A 131 CEKTYLVTLESPVADDTA-----------EQFAKGV----QLHNEKDLTKPAVLEVIT------PTQVRLTISEGRYHQV 189 (234)
T ss_dssp CCEEEEEEESSCCCTTHH-----------HHHHHCC----CCTTCSSCCCCCEEEEEE------TTEEEEEESCCCTTHH
T ss_pred CCEEEEECCCCCCCHHHH-----------HHHHEEE----EECCCEEEEEEEEEECCC------CCEEEEEEECCCHHHH
T ss_conf 857996055788877675-----------4542156----757955456567852159------9589999824973899
Q ss_pred HHHHHHHCCEEECCCC--CCC
Q ss_conf 9999870978604154--477
Q gi|254780610|r 261 RVHMAHKGNPLIGDPL--YGK 279 (340)
Q Consensus 261 Rvhla~lG~PIvGD~~--YG~ 279 (340)
|+||+++||||++... ||.
T Consensus 190 R~h~~~~G~pV~~L~Ri~~G~ 210 (234)
T 1ksk_A 190 KRMFAAVGNHVVELHRERIGG 210 (234)
T ss_dssp HHHHHHTTCCEEEEEEEEETT
T ss_pred HHHHHHCCCEEEEEEEEEECC
T ss_conf 999998699798999999876