HHsearch results for GI: 254780610 and protein with PDBid: 1v9k_A
>1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 PDB: 1xpi_A
Probab=100.00 E-value=0 Score=430.44 Aligned_cols=224 Identities=33% Similarity=0.484 Sum_probs=185.5
Q ss_pred HHCCCCCEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH
Q ss_conf 21014402789962401110456787542100222222102443344443643244443323240572120357888899
Q gi|254780610|r 91 DILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSE 170 (340)
Q Consensus 91 ~IlyED~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~ 170 (340)
-||||||+|+|||||+||+|||+++...++ ++.+..... ....+++|||||++||||||||||+.+++.|++
T Consensus 3 ~IlyED~~ilvvnKP~gl~vh~~~~~~~~~-~~~l~~~~~-------~~~~~~~vHRLDr~TSGlll~Ak~~~a~~~l~~ 74 (228)
T 1v9k_A 3 VIMYEDDHILVLNKPSGTAVHGGSGLSFGV-IEGLRALRP-------EARFLELVHRLDRDTSGVLLVAKKRSALRSLHE 74 (228)
T ss_dssp CEEEECSSEEEEEECTTSCSSCCSSSBCCH-HHHHHHHST-------TCSCCEESSCCCTTCEEEEEEESSHHHHHHHHH
T ss_pred EEEEECCCEEEEECCCCCCCCCCCCCCCHH-HHHHHHHCC-------CCCCCCEEEECCCCCCCEEEEECCHHHHHHHHH
T ss_conf 999978999999989998648998996269-999998677-------887566673079876233898656888999999
Q ss_pred HHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCEEEE
Q ss_conf 99972113221334454320243323321100134344433221234445555530000122210112566775001234
Q gi|254780610|r 171 QFVDHGKSTRLKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKC 250 (340)
Q Consensus 171 ~f~~~~~~~~v~K~Y~Aiv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~~~~~~~~slv~~ 250 (340)
+|. ++.|.|+|+|+|.|.+....++++.|+..+......+.+ .....|++|.|+|++++.+ ..+|||+|
T Consensus 75 ~f~----~r~v~K~Y~a~v~G~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~gk~a~T~~~~~~~~-----~~~slv~~ 143 (228)
T 1v9k_A 75 QLR----EKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIV--RVSQEGKPSETRFKVEERY-----AFATLVRC 143 (228)
T ss_dssp HHH----TTCSEEEEEEEEESCCCTTCCEECCCEEEEECTTSCEEE--EECTTSBCCCEEEEEEEEC-----SSEEEEEE
T ss_pred HHH----HCCEEEEEECCCCCCCCCCCCEEECCEECCCCCCCEEEE--EECCCCCCCCEEEEEEEEC-----CCCEEEEE
T ss_conf 997----383336870022786322356042020113333403788--8579982232676542034-----88679999
Q ss_pred EECHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHCEEEEECCCCCCEEEEECCCCHHH
Q ss_conf 43115899999999870978604154477554443345701355440798044321000424688976899984997899
Q gi|254780610|r 251 HLETGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSLSFSHPRNNQDMDFQVPIPEDM 330 (340)
Q Consensus 251 ~~~TGRtHQIRvhla~lG~PIvGD~~YG~~~~~~~~~~~~~~~~~~~~~~r~~LHA~~l~f~hP~t~~~~~f~aplP~~~ 330 (340)
+|+||||||||+||+++|||||||.+||+.... ........+++|++|||++|+|.||.||+.++|+||+|++|
T Consensus 144 ~~~TGRtHQIRvHla~lG~PIvGD~~Yg~~~~~------~~~~~~~~~~~rl~LHa~~L~f~hP~tg~~~~~~aplP~~f 217 (228)
T 1v9k_A 144 SPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFD------RQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGL 217 (228)
T ss_dssp EESSCCTTHHHHHHHHTTCCBTTCTTTSCHHHH------HHHHHTTCCCCSCCEEEEEEEEECTTTCCEEEEECCCCHHH
T ss_pred EECCCCHHHHHHHHHHCCCEEECCCCCCCCCCC------HHHHHHCCCCCCHHHHCCCCEEECCCCCCEEEEEECCHHHH
T ss_conf 958683899999987479748367665860018------55676325985278862616978899998899980685999
Q ss_pred HHHHHHHHC
Q ss_conf 999998851
Q gi|254780610|r 331 LTVIRKLNE 339 (340)
Q Consensus 331 ~~~l~~L~~ 339 (340)
+++|++|+-
T Consensus 218 ~~~l~~Lr~ 226 (228)
T 1v9k_A 218 KRCLQKMRN 226 (228)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999973