HHsearch results for GI: 254780610 and protein with PDBid: 1vio_A
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=100.00 E-value=0 Score=293.74 Aligned_cols=206 Identities=20% Similarity=0.292 Sum_probs=156.2
Q ss_pred CCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEEECCCHHCCHHHHHHHHHHCCCCCEEEE
Q ss_conf 87578999987176889899999998599049989932867580489889997056011110233222221014402789
Q gi|254780610|r 22 EGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITVPAAQKLNIAQENIPLDILYEDDDIIV 101 (340)
Q Consensus 22 g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~~~~~~~~~~~~~~~~~~IlyED~~llv 101 (340)
.+|||+||+..+ .+||++++++|++|+|+|||++++.+++.|..||.|.+... .-++|||++++|
T Consensus 2 ~mRLdkfLs~~~--~~SR~~a~~lI~~G~V~VNG~~v~~~~~~v~~~d~V~~~~~-------------~i~~~e~~~~~v 66 (243)
T 1vio_A 2 SLRLDKFIAENV--GLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFEDE-------------LLTWIEEGQYFM 66 (243)
T ss_dssp CEEHHHHHHHHH--TCCHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEETTE-------------ECCSSCCCCEEE
T ss_pred CHHHHHHHHHCC--CCCHHHHHHHHHCCEEEECCEEECCCCEECCCCCEEEECCC-------------EEEEECCCEEEE
T ss_conf 568999999877--85899999999789099999990549968488787995486-------------577603514999
Q ss_pred EECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCE
Q ss_conf 96240111045678754210022222210244334444364324444332324057212035788889999972113221
Q gi|254780610|r 102 INKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTRL 181 (340)
Q Consensus 102 inKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~~~~~v 181 (340)
+|||+|++||+++.. ..|+.+.+.... ..++++|||||++||||||||++..++..+..+ ...+
T Consensus 67 vnKP~G~~~~~~~~~-~~~v~~~~~~~~---------~~~~~~VhRLDr~TSGlll~ak~~~~~~~~~~~------~~~~ 130 (243)
T 1vio_A 67 LNKPQGCVCSNDDGD-YPTIYQFFDYPL---------AGKLHSAGRLDVDTTGLVLLTDDGQWSHRITSP------KHHC 130 (243)
T ss_dssp EEECTTCBSSCCC---CCBGGGGSCTTG---------GGGCEESSCCCTTCEEEEEEESCHHHHHHHHCT------TSCC
T ss_pred EECCCCCCCCCCCCC-CEEEEEECCCCC---------CCCEEEEEECCCCCCCCEEEECCHHHHHHHHHH------CCCC
T ss_conf 977998511123322-204876124455---------785635444588878706550284663322112------0387
Q ss_pred EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCEEEEEECHHHHHHHH
Q ss_conf 33445432024332332110013434443322123444555553000012221011256677500123443115899999
Q gi|254780610|r 182 KRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHLETGRTHQIR 261 (340)
Q Consensus 182 ~K~Y~Aiv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~~~~~~~~slv~~~~~TGRtHQIR 261 (340)
.|+|.+.|.|.+..+. ++ ..++.+ ...|+.+.|.+..++.... +.++|.|+||||||||
T Consensus 131 ~~~y~v~v~~~~~~~~--~~---------~l~~~v----~~~g~~~~~~~~~~~~~~~------~~l~v~l~TGRtHQIR 189 (243)
T 1vio_A 131 EKTYLVTLADPVEENY--SA---------ACAEGI----LLRGEKEPTKPAKLEILDD------YNVNLTISEGRYHQVK 189 (243)
T ss_dssp CEEEEEEESSCCCTTH--HH---------HHHHCC----CCTTCSSCCCCCEEEECSS------SEEEEEESCCCTTHHH
T ss_pred EEEEEEEECCCCCHHH--HH---------HHHCCE----EECCCCCEEEEEEEECCCC------CEEEEECCCCCCHHHH
T ss_conf 2899999953551668--99---------985545----6079022068887631688------3699985789645999
Q ss_pred HHHHHHCCEEECCCC--CCC
Q ss_conf 999870978604154--477
Q gi|254780610|r 262 VHMAHKGNPLIGDPL--YGK 279 (340)
Q Consensus 262 vhla~lG~PIvGD~~--YG~ 279 (340)
+||+++||||+|+.. ||+
T Consensus 190 ~hl~~lG~PIi~l~Ri~~g~ 209 (243)
T 1vio_A 190 RMFAALGNKVVGLHRWKIGD 209 (243)
T ss_dssp HHHHHTTCCEEEEEEEEETT
T ss_pred HHHHHCCCEEEEEEEEEECC
T ss_conf 99998699697989999897