HHsearch results for GI: 254780610 and protein with PDBid: 2apo_A
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=96.32 E-value=0.0015 Score=39.65 Aligned_cols=86 Identities=19% Similarity=0.148 Sum_probs=54.8
Q ss_pred CCCCCEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 01440278996240111045678754210022222210244334444364324444332324057212035788889999
Q gi|254780610|r 93 LYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQF 172 (340)
Q Consensus 93 lyED~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f 172 (340)
-|-...+|.+|||+|+.+| -++..+...+.. .+.|-..-||--.||||++|-+..+ .+...|
T Consensus 62 ~~~~~G~l~idKP~G~TS~--------~vv~~vkk~l~~--------kK~GH~GTLDP~AtGvL~i~ig~aT--Kl~~~~ 123 (357)
T 2apo_A 62 DLIKYGVVVVDKPRGPTSH--------EVSTWVKKILNL--------DKAGHGGTLDPKVTGVLPVALERAT--KTIPMW 123 (357)
T ss_dssp HHHHTEEEEEEECSSSCHH--------HHHHHHHHHTTC--------SCEEESSCCCTTCEEEEEEEEGGGG--GGGGGT
T ss_pred HHHCCCEEEEECCCCCCHH--------HHHHHHHHHHCC--------CCCCCCCCCCCCCCEEEEEEECHHH--CCCHHH
T ss_conf 9855968999789999989--------999999998488--------8257786789767206999988564--306454
Q ss_pred HHHCCCCCEEEEEEEEEECCCCCCCCCCCC
Q ss_conf 972113221334454320243323321100
Q gi|254780610|r 173 VDHGKSTRLKRAYYAMVWGIPLPDSGIINA 202 (340)
Q Consensus 173 ~~~~~~~~v~K~Y~Aiv~G~~~~~~g~i~~ 202 (340)
. .-.|+|.|.+.=....++..|+.
T Consensus 124 ~------~~~K~Y~~~~~lg~~t~~~di~~ 147 (357)
T 2apo_A 124 H------IPPKEYVCLMHLHRDASEEDILR 147 (357)
T ss_dssp T------SSCEEEEEEEEESSCCCHHHHHH
T ss_pred C------CCCEEEEEEEEEEECCCCHHHHH
T ss_conf 3------79809999999722244177999