HHsearch results for GI: 254780610 and protein with PDBid: 2k6p_A
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=99.57 E-value=1.5e-16 Score=117.17 Aligned_cols=87 Identities=20% Similarity=0.221 Sum_probs=74.3
Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEEECCCH-HCCHHHHHHHHHHCCCCCEEEE
Q ss_conf 757899998717688989999999859904998993286758048988999705601-1110233222221014402789
Q gi|254780610|r 23 GRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITVPAAQ-KLNIAQENIPLDILYEDDDIIV 101 (340)
Q Consensus 23 ~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~~~~~~-~~~~~~~~~~~~IlyED~~llv 101 (340)
+|||+||...++ ..||+.++++|++|.|+|||+++ +++++|..||.|.+..+... ...+.+.+.++.|+|||++++|
T Consensus 1 mRlDk~L~~~~~-~~SRs~~~~lI~~G~V~vng~~~-k~s~~V~~Gd~i~i~~~~~~~~~~v~~i~~~~~i~~ED~~l~i 78 (92)
T 2k6p_A 1 MRIDKFLQSVGL-VKRRVLATDMCNVGAVWLNGSCA-KASKEVKAGDTISLHYLKGIEEYTILQIPALKNVPRKDTHLYI 78 (92)
T ss_dssp CBHHHHSTTTTS-CCCCCSSCCHHHHTCCEETTEEC-CTTCBCCTTCEEEECCSSCCEEEEECCCCCCSCCCSSSTTSSE
T ss_pred CCHHHHHHHCCC-CCCHHHHHHHHHCCCEEECCEEE-EECCEECCCCEEEEEECCCCEEEEEEECCCCCCCCHHHHCCCE
T ss_conf 977899987377-37999999999889289799997-5236827999999983897079999978865798525518269
Q ss_pred EECCCHHHCC
Q ss_conf 9624011104
Q gi|254780610|r 102 INKPAGLVVH 111 (340)
Q Consensus 102 inKPaGl~vh 111 (340)
+|||+||--|
T Consensus 79 i~K~~~le~~ 88 (92)
T 2k6p_A 79 APKTKELEHH 88 (92)
T ss_dssp EECCCC----
T ss_pred ECCHHCCCCC
T ss_conf 8060046344