HHSEARCH alignment of GI: 254780610 and SCOP domain: d1vioa2

Alignment

Probab=98.77  E-value=6.5e-09  Score=70.16  Aligned_cols=51  Identities=22%  Similarity=0.366  Sum_probs=47.2

Q ss_pred             CCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEE
Q ss_conf             87578999987176889899999998599049989932867580489889997
Q gi|254780610|r   22 EGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLIT   74 (340)
Q Consensus        22 g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~   74 (340)
                      .+|||+||+...  .+||++++++|++|+|+|||+.++++++.|.+||.|.+.
T Consensus         1 smRLD~~Ls~~~--~~SR~~a~~lI~~g~V~Vng~~v~~~~~~v~~~d~I~~~   51 (58)
T d1vioa2           1 SLRLDKFIAENV--GLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFE   51 (58)
T ss_dssp             CEEHHHHHHHHH--TCCHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEET
T ss_pred             CCHHHHHHHHCC--CCCHHHHHHHHHCCEEEECCEEECCCCCCCCCCCEEEEC
T ss_conf             927999999858--978999999998592899999947788798999999999

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Alpha-L RNA-binding motif
superfamily: Alpha-L RNA-binding motif
family: Pseudouridine synthase RsuA N-terminal domain
domain: Pseudouridine synthase RsuA N-terminal domain
species: Haemophilus influenzae [TaxId: 727]