HHSEARCH alignment of GI: 254780610 and SCOP domain: d2ey4a2

Alignment
>d2ey4a2 d.265.1.2 (A:8-252) Pseudouridine synthase II TruB {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=97.22  E-value=0.0002  Score=43.48  Aligned_cols=71  Identities=21%  Similarity=0.334  Sum_probs=50.1

Q ss_pred             CCEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf             40278996240111045678754210022222210244334444364324444332324057212035788889999972
Q gi|254780610|r   96 DDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDH  175 (340)
Q Consensus        96 D~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~  175 (340)
                      ...+++||||.|+.+|        .+++.+...+..        .+.|-...||-..||||++|-+..  ..+...|.  
T Consensus        41 ~~G~l~idKP~G~TS~--------~vv~~vkk~l~~--------kKvGH~GTLDP~AtGvL~i~iG~a--TKl~~~~~--  100 (245)
T d2ey4a2          41 QFGVINLDKPPGPTSH--------EVVAWIKKILNL--------EKAGHGGTLDPKVSGVLPVALEKA--TRVVQALL--  100 (245)
T ss_dssp             HTEEEEEEECSSSCHH--------HHHHHHHHHTTC--------SCEEESSCCCTTCEEEEEEEEGGG--GGGHHHHT--
T ss_pred             CCCEEEEECCCCCCHH--------HHHHHHHHHHCC--------CCCCCCCCCCCCCEEEEEEEECHH--HHHHHHHC--
T ss_conf             7828999679979889--------999999987176--------777757658975155678884488--88999966--


Q ss_pred             CCCCCEEEEEEEEEE
Q ss_conf             113221334454320
Q gi|254780610|r  176 GKSTRLKRAYYAMVW  190 (340)
Q Consensus       176 ~~~~~v~K~Y~Aiv~  190 (340)
                          .-.|+|.|.+.
T Consensus       101 ----~~~K~Y~~~~~  111 (245)
T d2ey4a2         101 ----PAGKEYVALMH  111 (245)
T ss_dssp             ----TSCEEEEEEEE
T ss_pred             ----CCCCEEEEEEE
T ss_conf             ----17848999888


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Pseudouridine synthase
superfamily: Pseudouridine synthase
family: Pseudouridine synthase II TruB
domain: Pseudouridine synthase II TruB
species: Archaeon Pyrococcus furiosus [TaxId: 2261]