HHSEARCH alignment of GI: 254780610 and SCOP domain: d2uubd1

Alignment

Probab=98.08  E-value=3.6e-06  Score=53.85  Aligned_cols=54  Identities=28%  Similarity=0.413  Sum_probs=47.2

Q ss_pred             CCCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEEE
Q ss_conf             6875789999871768898999999985990499899328675804898899970
Q gi|254780610|r   21 AEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITV   75 (340)
Q Consensus        21 ~g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~~   75 (340)
                      -++|||..+-+. .-.-|+.++++++..|.|.|||+++.-|++.|++||.|.+.-
T Consensus        96 LE~Rld~vv~r~-g~a~t~~~ARQ~v~Hg~i~vNg~~v~ips~~~~~gd~I~vre  149 (208)
T d2uubd1          96 LESRLDNVVYRL-GFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAE  149 (208)
T ss_dssp             HHTBHHHHHHHT-TSSSSHHHHHHHHHTTCEEETTEECCCTTCBCCTTCEEEECG
T ss_pred             HHHHHHHHHHHC-CCCCCHHHHHHHHHHCCEECCCEEEEECCEEECCCCEEEHHH
T ss_conf             999999999853-620128988899873574228839986267942886200111

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Alpha-L RNA-binding motif
superfamily: Alpha-L RNA-binding motif
family: Ribosomal protein S4
domain: Ribosomal protein S4
species: Thermus thermophilus [TaxId: 274]