BLAST/PSIBLAST alignment of GI: 254780610 and GI: 190893167 at iteration 1
>gi|190893167|ref|YP_001979709.1| RNA-pseudouridylate synthase, ribosomal large subunit D [Rhizobium etli CIAT 652] Length = 354
>gi|190698446|gb|ACE92531.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D [Rhizobium etli CIAT 652] Length = 354
 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/334 (56%), Positives = 244/334 (73%), Gaps = 2/334 (0%)

Query: 7   NCSSIKISLLSDSTAEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVV 66
             + I+  L +D TAEGR+D WL   L E+FSRS +K+LI +G +S+ G +  +P RKV 
Sbjct: 20  QAAGIRKVLTADETAEGRLDAWLTAQLGEEFSRSRIKVLIKDGQVSMRGQLITDPQRKVR 79

Query: 67  PGDSFLITVPAAQKLNIAQENIPLDILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALL 126
            GDSF IT+P  +      E+IPLDILYEDDD+IVI+KPAGLVVHP  GNWTGTLVNAL+
Sbjct: 80  AGDSFEITLPEPEDPTPQGEDIPLDILYEDDDLIVISKPAGLVVHPGSGNWTGTLVNALI 139

Query: 127 YHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTRLKRAYY 186
           +HC   LS I GV+RPGIVHRLDKDTTGVMVVAKND+AH+ LS QF DHG++  L+RAY 
Sbjct: 140 HHCGATLSGIGGVRRPGIVHRLDKDTTGVMVVAKNDVAHRHLSLQFADHGRTMPLERAYR 199

Query: 187 AMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNK--NSNFA 244
           A+VWG P   +G ++APLGR   +R RRAVK  D + AD AITHY+ IE +++  ++   
Sbjct: 200 AIVWGRPRSLTGTVDAPLGRATGDRTRRAVKRPDSQDADEAITHYEVIERFHETPDATAL 259

Query: 245 VSLLKCHLETGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQAL 304
            SL++C LETGRTHQIRVHMAH G+PL+GD +YG GF+TKAN++  + +  +    RQAL
Sbjct: 260 ASLVECRLETGRTHQIRVHMAHIGHPLLGDTVYGAGFRTKANLLPEDIRKVVNRFDRQAL 319

Query: 305 HAHSLSFSHPRNNQDMDFQVPIPEDMLTVIRKLN 338
           HA  L F HPR+ + M F+VP+P+DM+ ++  L 
Sbjct: 320 HAFMLQFEHPRSGELMHFEVPLPDDMVELVEALR 353