BLAST/PSIBLAST alignment of GI: 254780610 and GI: 222149596 at iteration 1
>gi|222149596|ref|YP_002550553.1| ribosomal large subunit pseudouridine synthase RluD subfamily [Agrobacterium vitis S4] Length = 342
>gi|221736578|gb|ACM37541.1| ribosomal large subunit pseudouridine synthase RluD subfamily [Agrobacterium vitis S4] Length = 342
 Score =  374 bits (961), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/341 (53%), Positives = 232/341 (68%), Gaps = 3/341 (0%)

Query: 1   MQQTLDNCSSIKISLLSDSTAEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKN 60
           M          +  L++   AEGR+D WLA SL    SR+ VK LI  G + +NG     
Sbjct: 1   MTDPFKQAGEPRKELIAGEDAEGRLDAWLAASLGGDLSRNRVKALIEQGAVFVNGTAVTE 60

Query: 61  PNRKVVPGDSFLITVPAAQKLNIAQENIPLDILYEDDDIIVINKPAGLVVHPAPGNWTGT 120
           P RK+ PGD  +I +P  +      E+IPL +LYED D+IV++KPAGLVVHP  GNWTGT
Sbjct: 61  PKRKIKPGDQLVIAMPEPEDPEPKGEDIPLTVLYEDKDLIVLSKPAGLVVHPGAGNWTGT 120

Query: 121 LVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTR 180
           LVNAL++HC ++LS I GVKRPGIVHRLDK+T+GVMVVAKND+AH+ L++QF DHG+S  
Sbjct: 121 LVNALIHHCGDSLSGIGGVKRPGIVHRLDKETSGVMVVAKNDIAHRHLADQFADHGRSGP 180

Query: 181 LKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNK- 239
           L+RAY A+VWG P    G I+A LGR   +R +R VK  D   A  AITHYQ +E Y + 
Sbjct: 181 LERAYQALVWGRPRGLRGTIDAALGRA-GDRTKRTVKREDTDDAREAITHYQVMERYGEK 239

Query: 240 -NSNFAVSLLKCHLETGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILS 298
            ++    SL++C LETGRTHQIRVHMAH G+PLIGDP YG  FKTKAN++ + AK+ + +
Sbjct: 240 PDATCLASLVECRLETGRTHQIRVHMAHIGHPLIGDPEYGAAFKTKANLLPDAAKAIVTN 299

Query: 299 LARQALHAHSLSFSHPRNNQDMDFQVPIPEDMLTVIRKLNE 339
             RQALHA+ L+F HP     M F  PIP+DM T+IR L +
Sbjct: 300 FHRQALHAYLLAFEHPTTGDVMHFAAPIPDDMETIIRALRD 340