BLAST/PSIBLAST alignment of GI: 254780610 and GI: 227823294 at iteration 1
>gi|227823294|ref|YP_002827266.1| putative ribosomal large subunit pseudouridine synthase D [Sinorhizobium fredii NGR234] Length = 352
>gi|227342295|gb|ACP26513.1| putative ribosomal large subunit pseudouridine synthase D [Sinorhizobium fredii NGR234] Length = 352
 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 180/339 (53%), Positives = 233/339 (68%), Gaps = 3/339 (0%)

Query: 1   MQQTLDNCSSIKISLLSDSTAEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKN 60
           M       +  +  L +D  A GR+D +L  +L  +FSR+ +K LI  G +SING+    
Sbjct: 11  MNDPFKQATGNRKVLTADENAAGRLDAFLTEALSGEFSRNRIKALIEQGAVSINGVTVLE 70

Query: 61  PNRKVVPGDSFLITVPAAQKLNIAQENIPLDILYEDDDIIVINKPAGLVVHPAPGNWTGT 120
           P RKV PGD F IT+PA +      E+IP+D+LYEDDD+IV+ KPAGLVVHP  GNWTGT
Sbjct: 71  PKRKVHPGDRFEITLPAPEDPEPKGEDIPIDVLYEDDDLIVLVKPAGLVVHPGAGNWTGT 130

Query: 121 LVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTR 180
           LVNAL++HC ++LS I GV+RPGIVHRLDK+T+GVMVVAKND AH+ LS+QF DHG++  
Sbjct: 131 LVNALIHHCGDSLSGIGGVRRPGIVHRLDKETSGVMVVAKNDAAHRHLSDQFADHGRTGP 190

Query: 181 LKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNK- 239
           L+RAY A+VWG P    G INA LGR   +R +RAVK  +   A  AITHY+ +E Y++ 
Sbjct: 191 LERAYQAVVWGRPRQLKGTINAALGRA-GDRTKRAVKREESDDAREAITHYEVVERYHEK 249

Query: 240 -NSNFAVSLLKCHLETGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILS 298
            +     + ++CHLETGRTHQIRVHMAH GNPLIGDP YG  F+TKAN++   A+S +  
Sbjct: 250 PDGTCLAATVECHLETGRTHQIRVHMAHIGNPLIGDPDYGAAFRTKANLLPETARSVVNR 309

Query: 299 LARQALHAHSLSFSHPRNNQDMDFQVPIPEDMLTVIRKL 337
            +RQALHA  L F HP +   M F+ P+P DM  ++  L
Sbjct: 310 FSRQALHAFMLQFEHPSSGDTMHFEAPLPADMQELVAAL 348